BS25988.complete Sequence
2273 bp assembled on 2011-08-23
GenBank Submission: KX800722
> BS25988.complete
GAAGTTATCAGTCGACATGCAGTCCCCCAACCAAACACAAGCCCATCTCC
AGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAGCAACACCAGCAG
CAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAATCAACACCAGCA
CCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCACTCGA
GCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGCGGTC
AATGGACACAACAGCTCCTTGGAGGACGGCTACGGATCGCCAAGGAGCAG
CCACAGTGGCGGCGGGGGCGGTGGTACTCTGCCAGCCTTCCAGCGGATCG
CATACCCCAACAGTGGCTCCGTGGAACGTTACGCTCCGATAACCAATTAT
CGCGGTCAGAACGATACCTGGTTCGATCCGTTAAGCTACGCCACCTCCTC
TTCCGGGCAGGCGCAGTTGGGCGTCGGTGTTGGAGCCGGAGTGGTCTCGA
ATGTGATACGGAATGGGCGGGCCATTTCGGCTGCTAATGCAGCAGCTGCA
GCCGCCGCGGATGGAACCACTGGACGCGTAGATCCTGGAACCTTTCTCTC
CGCCTCGGCATCGTTGTCAGCAATGGCCGCTGAATCAGGCGGGGATTTCT
ATAAACCCAACTCATTTAATGTGGGCGGCGGTGGCCGTAGTAAGGCTAAC
ACGAGTGGTGCCGCCAGCTCCTACTCCTGTCCAGGCTCGAATGCAACCTC
GGCGGCGACTTCGGCGGTGGCGTCGGGAACGGCAGCAACTGCAGCGACGA
CGCTCGACGAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGCGCCTCA
AAGCGAGCCGGACTTTCCTGCTCCAACTGCCACACCACCCACACTTCGTT
GTGGCGCCGCAATCCCGCCGGAGAGCCCGTCTGCAATGCATGCGGCCTGT
ACTATAAGCTCCACAGTGTCCCACGGCCACTGACCATGAAAAAGGACACC
ATTCAGAAACGCAAGCGCAAGCCGAAAGGAACGAAGAGCGAGAAGTCCAA
GTCAAAGTCAAAGAACGCTTTGAATGCCATCATGGAAAGTGGTTCATTGG
TGACCAATTGCCATAACGTTGGTGTCGTCCTGGACAGCAGCCAGATGGAT
GTCAATGACGATATGAAACCACAGCTCGATCTGAAACCATACAACTCATA
CTCATCGCAGCCGCAGCAACAGCTTCCACAGTACCAGCAGCAGCAGCAGC
TGCTAATGGCTGATCAGCACTCATCGGCGGCCAGCTCGCCCCATAGCATG
GGTTCCACCTCATTGTCGCCATCAGCCATGTCACATCAGCATCAGACTCA
TCCACATCAGCAGCAACAGCAGCAGCTCTGTTCCGGGCTGGACATGTCGC
CCAACTCAAACTACCAAATGTCGCCGCTCAACATGCAGCAGCATCAGCAG
CAGCAATCGTGCAGCATGCAGCACTCACCCAGCACACCCACATCCATCTT
CAACACCCCATCGCCAACTCACCAGCTCCACAATAACAATAACAACAACA
ACAACAGCTCGATCTTCAACAACAACAACAACAACAATAGTAGTAGCAAT
GAGAATAACAACAAACTTATACAGAAATATCTGCAAGCTCAGCAACTGAG
CAGCAGCAGCAACAGCGGCTCCACCAGCGACCACCAGTTGCTGGCCCAAC
TGCTGCCGAACTCCATTACGGCGGCAGCAGCAGCAGCAGCGGCGGCGGCA
GCGGCGGCGATCAAGACGGAGGCCTTGTCGCTCACCTCCCAGGCCAACTG
CTCCACAGCGTCGGCGGGACTTATGGTCACCTCAACACCGACCACGGCAT
CGAGCACATTATCGTCCCTGAGTCACAGCAACATTATTAGTCTGCAGAAT
CCGTATCACCAGGCCGGAATGACGCTGTGCAAGCCCACGAGACCTTCCCC
ACCCTACTACCTGACTCCGGAGGAGGATGAGCAGCCCGCTCTCATCAAGA
TGGAAGAGATGGATCAGTCGCAACAGCAACAACAGCAGCAGCAGCATCAG
CAGCAGCAACATGGAGAGATAATGCTCAGCCGATCGGCCTCGCTGGACGA
GCACTACGAACTGGCCGCCTTCCAGAGACATCAGCAGCAGCAGCAACAGC
TGCAGCAGCAGACTGCCGCCCTCTTGGGTCAACATGAGCAGCATGTGACC
AACTATGCGATGCATAAGTTCGGCGTTGACCGGGAAACAGTGGTGAAGAT
GGAGTAGAAGCTTTCTAGACCAT
BS25988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 3795 | CG3992-PA | 1554..3795 | 16..2257 | 11210 | 100 | Plus |
| srp-RF | 2241 | CG3992-PF | 1..2241 | 17..2257 | 11205 | 100 | Plus |
| srp-RD | 2241 | CG3992-PD | 1..2241 | 17..2257 | 11205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RF | 3274 | CG3992-RF | 455..2696 | 16..2257 | 11210 | 100 | Plus |
| srp-RD | 3841 | CG3992-RD | 1022..3263 | 16..2257 | 11210 | 100 | Plus |
| srp-RA | 4459 | CG3992-RA | 1640..3881 | 16..2257 | 11210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16002406..16003503 | 1160..2257 | 5490 | 100 | Plus |
| 3R | 32079331 | 3R | 15999380..15999773 | 16..409 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 16001189..16001406 | 624..841 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 15999843..16000059 | 407..623 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 16001751..16001916 | 841..1006 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 16002167..16002323 | 1004..1160 | 785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 02:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2938 | 1549..2193 | 353 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6899 | 1535..1752 | 309 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2539 | 1505..1738 | 306 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2666 | 1300..1683 | 305 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2250..2534 | 1412..1687 | 292 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6923 | 1505..1746 | 287 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 1521..1755 | 286 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2938 | 1167..1750 | 271 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2845 | 1320..1763 | 236 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..7106 | 1436..1773 | 207 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6914 | 1208..1376 | 204 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7091 | 1334..1681 | 198 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6697..6955 | 1316..1590 | 197 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7092 | 1319..1701 | 184 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..7181 | 1333..1740 | 180 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6890 | 1207..1376 | 175 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2466 | 1621..1752 | 165 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..7074 | 1224..1598 | 162 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6416..6572 | 1528..1687 | 143 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1124 | 1333..1376 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2989 | 1207..1556 | 136 | 54.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1102..1145 | 1333..1376 | 130 | 77.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 960..1012 | 1325..1377 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 1621..1685 | 120 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8022 | 1337..1415 | 118 | 65.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9466 | 1337..1415 | 118 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1587 | 1334..1376 | 116 | 74.4 | Plus |
BS25988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:59 Download gff for
BS25988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 974..3214 | 17..2257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:29 Download gff for
BS25988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1641..3881 | 17..2257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:45 Download gff for
BS25988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1641..3881 | 17..2257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:45 Download gff for
BS25988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15999381..15999773 | 17..409 | 100 | -> | Plus |
| 3R | 15999846..16000059 | 410..623 | 100 | -> | Plus |
| 3R | 16001189..16001406 | 624..841 | 100 | -> | Plus |
| 3R | 16001752..16001916 | 842..1006 | 100 | -> | Plus |
| 3R | 16002170..16002323 | 1007..1160 | 100 | -> | Plus |
| 3R | 16002407..16003503 | 1161..2257 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:29 Download gff for
BS25988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11825103..11825495 | 17..409 | 100 | -> | Plus |
| arm_3R | 11825568..11825781 | 410..623 | 100 | -> | Plus |
| arm_3R | 11826911..11827128 | 624..841 | 100 | -> | Plus |
| arm_3R | 11827474..11827638 | 842..1006 | 100 | -> | Plus |
| arm_3R | 11827892..11828045 | 1007..1160 | 100 | -> | Plus |
| arm_3R | 11828129..11829225 | 1161..2257 | 100 | | Plus |
BS25988.pep Sequence
Translation from 16 to 2256
> BS25988.pep
MQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHHNSSS
SSPGPAGLHHSSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSHSGGG
GGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDPLSYATSSSGQAQ
LGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSASASL
SAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSAATSA
VASGTAATAATTLDEHVSRANSRRLSASKRAGLSCSNCHTTHTSLWRRNP
AGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKN
ALNAIMESGSLVTNCHNVGVVLDSSQMDVNDDMKPQLDLKPYNSYSSQPQ
QQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHPHQQQ
QQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFNTPSP
THQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNS
GSTSDHQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCSTASA
GLMVTSTPTTASSTLSSLSHSNIISLQNPYHQAGMTLCKPTRPSPPYYLT
PEEDEQPALIKMEEMDQSQQQQQQQQHQQQQHGEIMLSRSASLDEHYELA
AFQRHQQQQQQLQQQTAALLGQHEQHVTNYAMHKFGVDRETVVKME*
BS25988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-PF | 746 | CG3992-PF | 1..746 | 1..746 | 3862 | 100 | Plus |
| srp-PD | 746 | CG3992-PD | 1..746 | 1..746 | 3862 | 100 | Plus |
| srp-PA | 1264 | CG3992-PA | 519..1264 | 1..746 | 3862 | 100 | Plus |
| srp-PE | 731 | CG3992-PE | 1..731 | 1..746 | 3462 | 91.8 | Plus |
| srp-PB | 1249 | CG3992-PB | 519..1249 | 1..746 | 3462 | 91.8 | Plus |
