BS25990.complete Sequence
2315 bp assembled on 2011-08-23
GenBank Submission: KX802255
> BS25990.complete
GAAGTTATCAGTCGACATGGCTCACCCACGGAAGGCAGTTGCGACACCAG
CAACACTTCAACTTGGCCCACCAGCACAAACAGCACAAAGCCCGGCAGCA
ACATTGCGGCACAGCAGAACAGCCTCAAGTTCAAGGCGGCTATCGTTAAT
CAGATGTTTTATATCCTGCCACACGTTCAACTTGTTCCTGCTGCTTCTCC
TGTTGGCCAGCGGAGTCCGTGCTGCCAGCAAGCTGGCCACTCGGAGCAAC
AAAACATCGGGCTCATCGACAGCATCGGGAGTCGGAGCCGGAACAGCGGC
AACTTCGGCAGCGGCGGCGGCAGCGTCAGGAACACCCATTTGGGATCATG
CCATCGATTTGAATGACGATTTTCGCATACTATGGCAAATCATTAATCAG
GATATAACATTTGAAATACAGGCACGTACCCTGGGCTACGTCGGGTTCGG
ATTCTCGCCCGATGGCAATCTGGCTGGTGCCGATATGGCCATCGGCTGGG
TGGACAAGGGTCAAACCTATTTTCAGGATCGACACGTCACACGGAATGGA
GACCCCGAACCGGTGGTGGATCCCTCGCAGGATTATATGCTGATGCTGGG
CTACGAGAACGCGACCCACACGGTCCTCCGCTTCCGACGCAAACTGGACA
CATGCGACCCCAGCCACGACATCGCCATCACGAACGACACGATGCGCCTG
CTGTACATGTATCACGCCCAGGATCCGCCGCACGGCTCGGTGCGTCCTGG
CACCCTTCCGGATCCGGCCCGCGCCTTCCGCCCCTACCGCCCCATGGTCC
TCATGCAGCGCGCCCAGCTGCCGATGCCCTCACCCACGCACGACGAGCGC
GTGCGAGTCCTCGAGCTGCGCAACGAGGATGTGGAGCTGCCCGCCGGCGA
CCTACCGCTCTTCTGGTGCAAGATGTTCAAGCTGGAGGACATCAATCGCA
AGCACCACCTGATCCGGTACGAGCCGATTTATGATTCATCGTCCAGCGTG
CACTACTTGCAGCACATAACGCTGCACGAGTGCCAGGGTGCCCACGCGGA
GCTGGAGGAGATGGCACGCGAGCAGGGCCGCCCGTGCCTCGGAGCCCGAT
CCATTCCGCTGGCGTGCAACGCCATCGTGGCCTCCTGGTCGCGCGGCAGC
GAGGGCTTTACTTATCCACATGAGGCCGGCTACCCGATCGAGTCGCGGCA
GGCGAAATATTATTTAATGGAGACCCATTACAACAATTTGAAGCCCGACT
TTGCCCAATTGCACGCCAGACAAATGGCGGATAATTCGGGTTTGAAAATC
TACTTTACGCACGTCCTGCGACCTAACGATGCTGGCACACTGTCAATCGG
AATGGACCCCAATTGGCGACACATTATCCCGCCGGGCCAGAAGCGGGTCG
TTTCCGAGGGTCAGTGTATCGAGGACTGCACCGGCTACGCCTTCCCCCAG
CAGGGCATCAACATATTCGCGGTGATGATGCGCACCCACCAGATCGGCAA
GGAGGTCAAATTACGCCAGATACGACAAACCGAGGAGCTGCCGCCAATTG
CACACGACAGCAATATAGATGTTGCCTATCAGGACTTTCGACGTTTGCCA
CAATCGGTGCATTCCATGCCCGGGGATAGACTCATCGCCGAATGCATTTA
TGACAGTTCGTCACGAAAGGCAATTACCCTGGGTGGACTTACCATGAAGG
AAGAAAGCTGCACGGTGCTGACACTCTACTATCCACGCCAGAAGAAACTG
ACAACGTGTCACTCACTGCCGAGTCTGCCCACAGTGTTGCACTCGCTTGG
TATCGAGCAACTGGCAACCGACTCGAACCCCGTGCTTATATCATCGCCGC
CCGAATTGGCCGGAATGACACTGGAGGCACGTCTGATATCCTACGACTGG
GAGAATCAATTTGGCGAATTCCAGGAGGCCACACGCAAGGGCAGCTTCAA
GCCCATTTGCTGGGGGGCCAAGAATCATGTGGTGCCGGGCTCCGAGTTTC
TCGAGGGCTACAGCATAAATGTGACCAAAACGTACAAGAAGCACCGTCGG
TGCAAACCCAAGCGGCCCCTGGCCCCGCCCACCGAGCGCACCGCCCCGCC
ACCCGCGTCCGACCTCAGCGAGCTCCCGGTGCTGCACGAGTTGGACAACA
ACAACATCATCGAGGGAGCGGCGCGGAGCAGTCGCAGCTCGGCGACCGAC
GTCCACAGCCTGAGCCGCGGGAGCGGTCGCCACTTCATCAGCTGCCTGCT
CTGGCTGGGCGCCTCGTCCTGGTGGCTCCTGCTAATGCTAAGGACGTGAA
AGCTTTCTAGACCAT
BS25990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf413-RC | 2283 | CG12673-PC | 1..2283 | 17..2299 | 11400 | 100 | Plus |
| olf413-RB | 2283 | CG12673-PB | 1..2283 | 17..2299 | 11400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf413-RC | 8353 | CG12673-RC | 1028..3310 | 17..2299 | 11400 | 100 | Plus |
| olf413-RB | 3443 | CG12673-RB | 1028..3310 | 17..2299 | 11400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22184093..22184603 | 17..527 | 2555 | 100 | Plus |
| 3L | 28110227 | 3L | 22242347..22242659 | 1987..2299 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 22221699..22221984 | 682..967 | 1415 | 99.7 | Plus |
| 3L | 28110227 | 3L | 22223650..22223848 | 1152..1350 | 995 | 100 | Plus |
| 3L | 28110227 | 3L | 22222487..22222674 | 967..1154 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 22228996..22229166 | 1349..1519 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 22239167..22239336 | 1819..1988 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 22229257..22229424 | 1517..1684 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 22206827..22206985 | 524..682 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 22231223..22231359 | 1682..1818 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:55:26 has no hits.
BS25990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:35:07 Download gff for
BS25990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1002..3283 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:03 Download gff for
BS25990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1028..3309 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:08 Download gff for
BS25990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf413-RB | 1028..3309 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:08 Download gff for
BS25990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22229260..22229422 | 1520..1682 | 100 | -> | Plus |
| 3L | 22231224..22231359 | 1683..1818 | 100 | -> | Plus |
| 3L | 22239167..22239335 | 1819..1987 | 100 | -> | Plus |
| 3L | 22242348..22242658 | 1988..2298 | 100 | | Plus |
| 3L | 22184093..22184602 | 17..526 | 100 | -> | Plus |
| 3L | 22206830..22206985 | 527..682 | 100 | -> | Plus |
| 3L | 22221700..22221984 | 683..967 | 99 | -> | Plus |
| 3L | 22222488..22222673 | 968..1153 | 100 | -> | Plus |
| 3L | 22223652..22223847 | 1154..1349 | 100 | -> | Plus |
| 3L | 22228997..22229166 | 1350..1519 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:03 Download gff for
BS25990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22235448..22235758 | 1988..2298 | 100 | | Plus |
| arm_3L | 22177193..22177702 | 17..526 | 100 | -> | Plus |
| arm_3L | 22199930..22200085 | 527..682 | 100 | -> | Plus |
| arm_3L | 22214800..22215084 | 683..967 | 99 | -> | Plus |
| arm_3L | 22215588..22215773 | 968..1153 | 100 | -> | Plus |
| arm_3L | 22216752..22216947 | 1154..1349 | 100 | -> | Plus |
| arm_3L | 22222097..22222266 | 1350..1519 | 100 | -> | Plus |
| arm_3L | 22222360..22222522 | 1520..1682 | 100 | -> | Plus |
| arm_3L | 22224324..22224459 | 1683..1818 | 100 | -> | Plus |
| arm_3L | 22232267..22232435 | 1819..1987 | 100 | -> | Plus |
BS25990.pep Sequence
Translation from 16 to 2298
> BS25990.pep
MAHPRKAVATPATLQLGPPAQTAQSPAATLRHSRTASSSRRLSLIRCFIS
CHTFNLFLLLLLLASGVRAASKLATRSNKTSGSSTASGVGAGTAATSAAA
AAASGTPIWDHAIDLNDDFRILWQIINQDITFEIQARTLGYVGFGFSPDG
NLAGADMAIGWVDKGQTYFQDRHVTRNGDPEPVVDPSQDYMLMLGYENAT
HTVLRFRRKLDTCDPSHDIAITNDTMRLLYMYHAQDPPHGSVRPGTLPDP
ARAFRPYRPMVLMQRAQLPMPSPTHDERVRVLELRNEDVELPAGDLPLFW
CKMFKLEDINRKHHLIRYEPIYDSSSSVHYLQHITLHECQGAHAELEEMA
REQGRPCLGARSIPLACNAIVASWSRGSEGFTYPHEAGYPIESRQAKYYL
METHYNNLKPDFAQLHARQMADNSGLKIYFTHVLRPNDAGTLSIGMDPNW
RHIIPPGQKRVVSEGQCIEDCTGYAFPQQGINIFAVMMRTHQIGKEVKLR
QIRQTEELPPIAHDSNIDVAYQDFRRLPQSVHSMPGDRLIAECIYDSSSR
KAITLGGLTMKEESCTVLTLYYPRQKKLTTCHSLPSLPTVLHSLGIEQLA
TDSNPVLISSPPELAGMTLEARLISYDWENQFGEFQEATRKGSFKPICWG
AKNHVVPGSEFLEGYSINVTKTYKKHRRCKPKRPLAPPTERTAPPPASDL
SELPVLHELDNNNIIEGAARSSRSSATDVHSLSRGSGRHFISCLLWLGAS
SWWLLLMLRT*
BS25990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf413-PC | 760 | CG12673-PC | 1..760 | 1..760 | 4032 | 100 | Plus |
| olf413-PB | 760 | CG12673-PB | 1..760 | 1..760 | 4032 | 100 | Plus |
| CG5235-PB | 698 | CG5235-PB | 61..519 | 123..584 | 674 | 33.2 | Plus |
| CG5235-PA | 698 | CG5235-PA | 61..519 | 123..584 | 674 | 33.2 | Plus |
| Tbh-PC | 670 | CG1543-PC | 81..561 | 93..590 | 453 | 27.8 | Plus |
