BS26009.complete Sequence
612 bp assembled on 2011-08-23
> BS26009.complete
GAAGTTATCAGTCGACATGTATGTTCATGCGATTTATGAACATATGTTTA
GCCATTTGGCCGCTTTTGGCCAACTGTGCTTCGTGTTGGCTCCTGGGGAA
AGTGCAACATTTGCGACTCCATTAACGGGTACACTCACTAACGCCCTTCG
GTTGCATCTCCCTCACAGGCGCAATGGAGCCTCCAGCACAGCCTCCGAGC
CGCTGCGTCCCAATCTGGATGGCAGCCACCATCTGCAGGAGTACACCTAC
AAGAAGATAACGGCCTGCGACGTCTGCTCCCAGATTCTGAGAGGGCACAC
ACGCCAGGGATTACGCTGCCGCATCTGCAAGCTGAACGCCCATGGAGATT
GCGCCCCCAATCTGCCGCGCTGCCAGCCAAAGCAGAAGCTGCTCCGGCGA
CAGAAGAGCACATCGGAGCTGGAGAATCGAGTTGATATCGAGGAAGAAAC
GTCAGCGAATCCGAAGTCCGAAACAACGCGACCCTTTGGCGAACCACTGA
TGCTCCTCAAGAGCACGGAATCCAATCCGGATGAGTCCAAGGGCAATCGA
CGAGTGCGCTGAAAGCTTTCTAGACCCATTCGTTTGGCGGGCGCGGAAGG
GGGCGGAGGGGT
BS26009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RN | 1677 | CG43729-PN | 1282..1677 | 167..562 | 1965 | 99.7 | Plus |
| CG43729-RM | 654 | CG43729-PM | 259..654 | 167..562 | 1965 | 99.7 | Plus |
| CG43729-RC | 468 | CG43729-PC | 73..468 | 167..562 | 1965 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RN | 4584 | CG43729-RN | 3753..4148 | 167..562 | 1965 | 99.7 | Plus |
| CG43729-RM | 2382 | CG43729-RM | 1551..1946 | 167..562 | 1965 | 99.7 | Plus |
| CG43729-RC | 1842 | CG43729-RC | 1011..1406 | 167..562 | 1965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15456283..15456560 | 17..294 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 15456658..15456815 | 292..449 | 775 | 99.4 | Plus |
| 2R | 25286936 | 2R | 15463298..15463410 | 450..562 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:30 has no hits.
BS26009.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 17:56:43 Download gff for
BS26009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34365-RE | 13..558 | 17..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:42 Download gff for
BS26009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RB | 5355..5750 | 167..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:01 Download gff for
BS26009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RC | 1011..1406 | 167..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:01 Download gff for
BS26009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15456283..15456559 | 17..293 | 100 | -> | Plus |
| 2R | 15456660..15456815 | 294..449 | 99 | -> | Plus |
| 2R | 15463298..15463411 | 450..564 | 98 | -> | Plus |
| 2R | 15582822..15582838 | 565..581 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:42 Download gff for
BS26009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11344165..11344320 | 294..449 | 99 | -> | Plus |
| arm_2R | 11350803..11350916 | 450..564 | 98 | -> | Plus |
| arm_2R | 11470327..11470343 | 565..581 | 94 | | Plus |
| arm_2R | 11343788..11344064 | 17..293 | 100 | -> | Plus |
BS26009.pep Sequence
Translation from 16 to 561
> BS26009.pep
MYVHAIYEHMFSHLAAFGQLCFVLAPGESATFATPLTGTLTNALRLHLPH
RRNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLR
CRICKLNAHGDCAPNLPRCQPKQKLLRRQKSTSELENRVDIEEETSANPK
SETTRPFGEPLMLLKSTESNPDESKGNRRVR*
BS26009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-PC | 155 | CG43729-PC | 25..155 | 51..181 | 696 | 100 | Plus |
| CG43729-PM | 217 | CG43729-PM | 87..217 | 51..181 | 696 | 100 | Plus |
| CG43729-PN | 558 | CG43729-PN | 428..558 | 51..181 | 696 | 100 | Plus |
| CG43729-PA | 818 | CG43729-PA | 688..818 | 51..181 | 696 | 100 | Plus |
| CG43729-PT | 877 | CG43729-PT | 688..877 | 51..181 | 573 | 65.3 | Plus |
