BS26033.complete Sequence
1154 bp assembled on 2012-04-25
GenBank Submission: KX805280
> BS26033.complete
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGC
GCGCCCGGCTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTC
GAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGT
TCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTT
ATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATT
AACACCTACAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAA
TATGCCCAGAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGG
CCATGGATCGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGG
AAGCGGAAAATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGC
CTTGCAGAACTACGAACGCATGAATCTGGCGGATGCCTTGGTTTCGAAGA
GCTACGACAATGGCGAACGCATCATCAAACAGGGTGACGCCGCCGACGGC
ATGTACTTCATTGAGGAGGGAACGGTGTCCGTGCGCATGGACCAGGACGA
CGCCGAGGTGGAGATCTCCCAGCTGGGCAAGGGACAGTACTTCGGCGAGC
TGGCGCTGGTGACACATCGACCCCGGGCAGCATCCGTCTACGCCACGGGC
GGCGTAGTCAAGCTAGCATTCCTAGACACAGAGGCCTTTGAGCGCATCAT
GGGCTTCCTGACCGATGTACTCAAGCGCAATATCGTGATCTATGAGCAAA
TGTTCACCGACATGGCCCGCCGTAATACGAATTTGTGAAAGCTTTCTAGA
CCAT
BS26033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RD | 1122 | CG15862-PD | 1..1122 | 17..1138 | 5595 | 99.9 | Plus |
| Pka-R2-RB | 1134 | CG15862-PB | 1..1028 | 17..1044 | 5035 | 99.3 | Plus |
| Pka-R2-RA | 1134 | CG15862-PA | 1..1028 | 17..1044 | 5035 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RD | 1614 | CG15862-RD | 353..1475 | 17..1139 | 5600 | 99.9 | Plus |
| Pka-R2-RB | 4108 | CG15862-RB | 374..1401 | 17..1044 | 5035 | 99.3 | Plus |
| Pka-R2-RA | 2157 | CG15862-RA | 353..1380 | 17..1044 | 5035 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10005157..10005370 | 230..17 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 9997704..9997890 | 1019..833 | 920 | 99.5 | Minus |
| 2R | 25286936 | 2R | 9999734..9999916 | 412..230 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 9998415..9998564 | 757..608 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 9997101..9997220 | 1139..1020 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 9999425..9999529 | 513..409 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 9998707..9998802 | 609..514 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 9998269..9998349 | 835..755 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:21:25 has no hits.
BS26033.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:57 Download gff for
BS26033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RD | 346..1466 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:06 Download gff for
BS26033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RD | 353..1473 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:30 Download gff for
BS26033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RD | 353..1473 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:30 Download gff for
BS26033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9997103..9997220 | 1020..1137 | 100 | <- | Minus |
| 2R | 9997704..9997889 | 834..1019 | 99 | <- | Minus |
| 2R | 9998271..9998346 | 758..833 | 100 | <- | Minus |
| 2R | 9998415..9998562 | 610..757 | 100 | <- | Minus |
| 2R | 9998707..9998802 | 514..609 | 100 | <- | Minus |
| 2R | 9999425..9999525 | 413..513 | 100 | <- | Minus |
| 2R | 9999734..9999915 | 231..412 | 100 | <- | Minus |
| 2R | 10005157..10005370 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:06 Download gff for
BS26033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5884608..5884725 | 1020..1137 | 100 | <- | Minus |
| arm_2R | 5885209..5885394 | 834..1019 | 99 | <- | Minus |
| arm_2R | 5885776..5885851 | 758..833 | 100 | <- | Minus |
| arm_2R | 5885920..5886067 | 610..757 | 100 | <- | Minus |
| arm_2R | 5886212..5886307 | 514..609 | 100 | <- | Minus |
| arm_2R | 5886930..5887030 | 413..513 | 100 | <- | Minus |
| arm_2R | 5887239..5887420 | 231..412 | 100 | <- | Minus |
| arm_2R | 5892662..5892875 | 17..230 | 100 | | Minus |
BS26033.pep Sequence
Translation from 16 to 1137
> BS26033.pep
MSSDSSRRIQVPEELKEVLLQFSISFLVEQPPDVIDYAVEYFTKLQSERP
SVSHTDQSTDDQLSVNSQDADAEPPVMASSRRKSVFAEAYDPEADDDDDG
ATAVFPKTDEQRARLVESVKNVLLFRSLEKEQMNQVLDAMFERKVQPGDF
IIRQGDDGDNFYVIESGVYKVYINDKHINTYNHTGLFGELALLYNMPRAA
TVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELLNSVPMLKALQNYE
RMNLADALVSKSYDNGERIIKQGDAADGMYFIEEGTVSVRMDQDDAEVEI
SQLGKGQYFGELALVTHRPRAASVYATGGVVKLAFLDTEAFERIMGFLTD
VLKRNIVIYEQMFTDMARRNTNL*
BS26033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-PD | 373 | CG15862-PD | 1..373 | 1..373 | 1885 | 100 | Plus |
| Pka-R2-PB | 377 | CG15862-PB | 1..373 | 1..373 | 1769 | 93.8 | Plus |
| Pka-R2-PA | 377 | CG15862-PA | 1..373 | 1..373 | 1769 | 93.8 | Plus |
| Pka-R2-PE | 376 | CG15862-PE | 1..373 | 1..373 | 1744 | 93.3 | Plus |
| Pka-R1-PAC | 377 | CG42341-PAC | 26..369 | 15..359 | 614 | 40.3 | Plus |
