BS26039.complete Sequence
1283 bp assembled on 2011-08-02
GenBank Submission: KX801029
> BS26039.complete
GAAGTTATCAGTCGACATGGGTGTGGACAAGCTGCCCGAAATTCGAGCTC
TTAGTGAAGTGGTTGAACCCCACGTTTCAGGGTCCCGCCTCCTTAATTAT
CACACAAGCAGTCTGACGAAACCGGGCGATAACTACGGAAGCGTTCTCCT
GGCAATTCATGCCCGGCTGCAGAAATCCAATGGTGAGTCGTTTGAAGAGC
AGCTGGTGGCTAAAGTGCCTCCGATCGACCCCAAGTACTGGCAGTTTTTC
CAGCCTGAGCAGACATGCCTCACTGAGAACGCTGTTTACAAGATTTTGGC
CCCTGCTCTGGCCACCCTTCAAGATGAAGCTGGCGTCCCTGACGAGAGCC
AATTTAAAGGATTCCCTCGCTTCTATGGCTGTCGCGAATCCCTCGAATCC
AACTCATCAAAGGTAGATCAAAATGCCGTGTTGGTGCTGGAAAATTTGCG
TAGCAGTGGCTACGTCTCCGGCCAGAGGCTAAAAGCTTTCGATCTGGCCC
ACACGTTGCTAGCACTTAAATATATGGCCGAGTTCCACGCCCTGTCTCTA
GCTCTGCGGATCCTCAGACCAGAGGTGTTCCGGGAACAGGTCCGTCCGTT
CTTTAAAAAGTTCGATTGGCATGCTGAAGCGCCCGAGTGGAAGTCGGTAA
TGAAGGCAGAGACTCTGGAGGACATTCGTCGAGCCACCAACAACGACTCC
AGACTTGTAGCCCGAATGAAAGAGTTGTCGGACCAGTTTTTTGAATTCTT
AGCAGCCGCCCCAGATAGACCCGATGGGCCTTTTACCAGCATTATACACT
GTGACTTCTGGATAAATAATATAATGTTTCGTTACGGGCCCACTGGAACA
CCCGTCGAGCTGAAAATTATCGACTTTCAGACGGCACAGTACGATTCAGT
GGTGCATGACATAATCTCGTTTTTGCTATCAAGCGTTGATACGGCTATCT
TGGAGGTAGAGTTCGAACACATGTTAGAGGCCTACTATGAGGCTTTTGAG
CGTTGTCTGCGACGTGTGGGAGCTAAATTGGAGGTTCACACTTTTAAAGA
GTTCCGGCTGGAAGTGAAGAGGGTGGCGTACATACAAGTTCCCCACGCAA
TCTTTATGACGCGCTTTATATTGGCTGACAGCGCGCTCATCGGCGATTCA
GAGGCTGAGGAACGCCCCAAGCTTACGGACGTGCTGAAGAATACGGGATC
GGAGCGTATTAGCCGCAAATTAAGCCAAATTCTGAACTTGGCCGAAAAGT
TTGACATATTGTACTAGAAGCTTTCTAGACCAT
BS26039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31975-RC | 1251 | CG31975-PC | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| CG31975-RB | 1251 | CG31975-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31976-RB | 2206 | CG31976-RB | 58..1310 | 15..1267 | 6265 | 100 | Plus |
| CG31975-RC | 2206 | CG31975-RC | 58..1310 | 15..1267 | 6265 | 100 | Plus |
| CG31975-RB | 1335 | CG31975-RB | 58..1310 | 15..1267 | 6265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 140113..140935 | 837..15 | 4115 | 100 | Minus |
| 2L | 23513712 | 2L | 139471..139687 | 1267..1051 | 1085 | 100 | Minus |
| 2L | 23513712 | 2L | 139739..139955 | 1052..836 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:50:22 has no hits.
BS26039.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:55 Download gff for
BS26039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31975-RC | 60..1310 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:49 Download gff for
BS26039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31976-RB | 60..1310 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:08 Download gff for
BS26039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31975-RB | 60..1310 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:08 Download gff for
BS26039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 139471..139687 | 1051..1267 | 100 | <- | Minus |
| 2L | 139741..139954 | 837..1050 | 100 | <- | Minus |
| 2L | 140114..140933 | 17..836 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:49 Download gff for
BS26039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 139741..139954 | 837..1050 | 100 | <- | Minus |
| arm_2L | 139471..139687 | 1051..1267 | 100 | <- | Minus |
| arm_2L | 140114..140933 | 17..836 | 100 | | Minus |
BS26039.pep Sequence
Translation from 16 to 1266
> BS26039.pep
MGVDKLPEIRALSEVVEPHVSGSRLLNYHTSSLTKPGDNYGSVLLAIHAR
LQKSNGESFEEQLVAKVPPIDPKYWQFFQPEQTCLTENAVYKILAPALAT
LQDEAGVPDESQFKGFPRFYGCRESLESNSSKVDQNAVLVLENLRSSGYV
SGQRLKAFDLAHTLLALKYMAEFHALSLALRILRPEVFREQVRPFFKKFD
WHAEAPEWKSVMKAETLEDIRRATNNDSRLVARMKELSDQFFEFLAAAPD
RPDGPFTSIIHCDFWINNIMFRYGPTGTPVELKIIDFQTAQYDSVVHDII
SFLLSSVDTAILEVEFEHMLEAYYEAFERCLRRVGAKLEVHTFKEFRLEV
KRVAYIQVPHAIFMTRFILADSALIGDSEAEERPKLTDVLKNTGSERISR
KLSQILNLAEKFDILY*
BS26039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31975-PC | 416 | CG31975-PC | 1..416 | 1..416 | 2136 | 100 | Plus |
| CG31975-PB | 416 | CG31975-PB | 1..416 | 1..416 | 2136 | 100 | Plus |
| CG31974-PC | 413 | CG31974-PC | 3..413 | 5..416 | 950 | 46.5 | Plus |
| CG31974-PB | 413 | CG31974-PB | 3..413 | 5..416 | 950 | 46.5 | Plus |
| CG31974-PD | 416 | CG31974-PD | 3..416 | 5..416 | 936 | 46.2 | Plus |
