BS26063.complete Sequence
1706 bp assembled on 2011-09-20
GenBank Submission: KX805994
> BS26063.complete
GAAGTTATCAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGC
AAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACT
GTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACAC
TCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAG
AGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAAT
GGCTCCTCCACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCA
GGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGG
ATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAA
TACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGA
CAGCCTGCTGAAAGAACTGGACAATGCTCACATCTATGCTGTTCCTAACG
GATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTT
CGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCAC
TGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATG
CTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAG
GAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGG
AACAAACGGCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAG
TGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAG
CAGGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAG
TCGCGAGGATCAGTTGGATTCTATGCTAGGCAATCTACAGGCCAATATGA
GTCGCCAAGGAGTCAATACCGTGCAGAAGGGCTGCTGCAATGCCTGCGAG
AAGCCCATTGTGGGCCAGGTGATCACAGCCCTGGGCAAGACATGGCATCC
GGAGCACTTCACGTGCAACCACTGCAGCCAGGAGTTGGGCACCCGCAATT
TCTTCGAGCGCGACGGCTTCCCGTACTGCGAGCCGGACTACCACAATCTG
TTCAGCCCGCGCTGCGCCTACTGCAACGGCGCCATTCTGGACAAGTGCGT
AACGGCGCTGGACAAGACCTGGCACACGGAGCACTTCTTCTGCGCCCAAT
GCGGCCAGCAGTTCGGCGAGGAGGGATTCCATGAGCGTGACGGCAAGCCG
TACTGTCGCAACGACTACTTCGAGATGTTTGCCCCGAAGTGCAATGGCTG
CAACCGCGCCATTATGGAGAACTACATCTCGGCGCTGAACTCGCAGTGGC
ATCCGGATTGCTTCGTCTGCAGGGACTGCCGACAGCCCTTCCAAGGAGGA
TCCTTCTTTGATCACGAGGGACTGCCGTACTGCGAGACGCACTACCATGC
CAAGCGAGGATCCCTGTGCGCCGGGTGCTCCAAACCCATCACCGGACGCT
GCATCACGGCCATGTTCAAGAAATTCCACCCGGAACACTTCGTCTGCGCC
TTCTGCCTGAAGCAGTTGAATAAGGGCACTTTCAAGGAGCAAAAGGACAA
GCCATACTGCCACACCTGCTTCGACAAGATATTCGGATGAAAGCTTTCTA
GACCAT
BS26063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RC | 1674 | CG31794-PC | 1..1674 | 17..1690 | 8325 | 99.8 | Plus |
| Pax-RK | 1746 | CG31794-PK | 83..1746 | 27..1690 | 8275 | 99.8 | Plus |
| Pax-RJ | 1746 | CG31794-PJ | 83..1746 | 27..1690 | 8275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RC | 2377 | CG31794-RC | 374..2053 | 12..1691 | 8340 | 99.8 | Plus |
| Pax-RK | 2255 | CG31794-RK | 239..1903 | 27..1691 | 8280 | 99.8 | Plus |
| Pax-RJ | 2253 | CG31794-RJ | 265..1929 | 27..1691 | 8280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19403998..19404688 | 1424..734 | 3425 | 99.7 | Minus |
| 2L | 23513712 | 2L | 19401105..19401373 | 1691..1423 | 1330 | 99.6 | Minus |
| 2L | 23513712 | 2L | 19410480..19410648 | 193..25 | 830 | 99.4 | Minus |
| 2L | 23513712 | 2L | 19410248..19410414 | 359..193 | 820 | 99.4 | Minus |
| 2L | 23513712 | 2L | 19409402..19409552 | 741..591 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 19409769..19409910 | 501..360 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 19409612..19409704 | 593..501 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 21199830..21199885 | 1075..1020 | 190 | 89.3 | Minus |
| 2L | 23513712 | 2L | 21202145..21202200 | 1075..1020 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-27 13:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6814 | 22..136 | 124 | 62.2 | Plus |
BS26063.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:40 Download gff for
BS26063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RC | 207..1879 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:46 Download gff for
BS26063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RC | 379..2051 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:17 Download gff for
BS26063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RC | 379..2051 | 17..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:17 Download gff for
BS26063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19401107..19401372 | 1424..1689 | 99 | <- | Minus |
| 2L | 19403999..19404682 | 740..1423 | 99 | <- | Minus |
| 2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
| 2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
| 2L | 19409769..19409910 | 360..501 | 100 | <- | Minus |
| 2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
| 2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:46 Download gff for
BS26063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
| arm_2L | 19409769..19409910 | 360..501 | 100 | <- | Minus |
| arm_2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
| arm_2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
| arm_2L | 19401107..19401372 | 1424..1689 | 99 | <- | Minus |
| arm_2L | 19403999..19404682 | 740..1423 | 99 | <- | Minus |
| arm_2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
BS26063.pep Sequence
Translation from 16 to 1689
> BS26063.pep
MDDLDALLADLQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDNTPGYGS
LRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGAS
TGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLKE
LDNAHIYAVPNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVGTVEEQI
VQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIG
NGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQL
DSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTC
NHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDK
TWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM
ENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSL
CAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHT
CFDKIFG*
BS26063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-PC | 557 | CG31794-PC | 1..557 | 1..557 | 3074 | 100 | Plus |
| Pax-PH | 563 | CG31794-PH | 8..563 | 2..557 | 3064 | 99.8 | Plus |
| Pax-PK | 581 | CG31794-PK | 28..581 | 4..557 | 3057 | 100 | Plus |
| Pax-PJ | 581 | CG31794-PJ | 28..581 | 4..557 | 3057 | 100 | Plus |
| Pax-PA | 581 | CG31794-PA | 28..581 | 4..557 | 3057 | 100 | Plus |
