BS26084.complete Sequence
2225 bp assembled on 2011-08-23
GenBank Submission: KX800826
> BS26084.complete
GAAGTTATCAGTCGACATGGACGACATACGTAGCAGCATAGATGATATGA
TGGACCGCTTTAACGACAGCATTACCCATTCGGCACCCAAGAAACTACTT
TTCAACCGGCTTTCCGCCTCCTTCGATTTAGGAGTTTCACCCAATAAGCG
ACGTCGGGAACGGGAATCACCGGAACGCAGTCTTAACGACACCGCCTCTT
CCCTCAATATGCCCGCCAACGATTCCATGGCTTCTTTGCAGAACAGCAAA
CTACGGACCGAGCTGATCGAAACCAAGGCCATAGTAATTCAGCTGCGTAA
CGAAATCGAAAAGAAGAGCCGGGAACACAAAGAGGCCATATTGCTGGCTG
AGAACAAGAGCACGGCCTTAAAGGATCAGTGCGACATCACCAGCAAGAAG
AATTTGGAGCTGCAGGACGATCTTAAGGCGCTTCGTAAGCGAGAGCTGGT
CTTGAAGAATGAGGCCAGTCGGGCCACCGCCGAGTTGAACCAACTTAGGC
TTAAGTTCGATGAATCCACGCTCAAGTTGCAGAAGGAGAAGTACCTGCAG
AAGGAGGATGCCCGCGATGTGCACCTGTGCATCAACAACGAACTGAGCGA
ATATCGCCGCATAGCCCAGCGGGCCGATCTCGAACTGCAGTCTACGCGCA
ACGAACTGGAGCGCCTACGTCAACTCAATGAGGAGTTACAGGCCAGGGCT
TCCGGATTCGAGCAGCTGCGCGCCAATCACGAGAAGCAAACGCAAAGCTT
GAAGGTGGCCAACGATCGCATTCAGGAGCTGGAGTTCGAAATTCAGTCGT
ATAGCGACTGGAAGGAGGTGGTCAAAACCTCACGAGAGCGCCTGGCCAGT
GTTCCAGATTTGCTAGCTGAGGTGGAGCATCTGCGCAGCCACAACAAGCA
TTTAAACACTCTGATAGGCGATAAATTGCTTCTGGAGGAGCAGGTCTACG
ACTACAAAACGCGACTGGAGCGGGAGGAAGGTGCTCGGGCGGAAGCAGCT
TCCCTGCAGGTGAAACTGCTTCACATGGAGCAAGAACTCAAGGAATGGGT
CAAGGTGGCCCAGGATCACTGCTTGGCCAACACTTTGGTCAGCCCAATGG
CCCTACGCTCGCGCATTGAGCAACTGCTAAAAGAAGACATCATTCACGTA
GCAGAGAAGACATCATCGGCTTCGGATACCAAGCATTTGAATACCACAAT
TCGAGATCTAGAGCATAAGTGCGCCATTTACTTGAAGAACATCGAGGATC
TCAATATCGGACTGAAACGCCACAAGAACTTCAAGGAGCGACTGCAGCGC
AAACTGATCACCGTGTCTAAGGAGCGCGACTTCTACAAACAACTGGTGGA
AAACTTCGACAAGGACACGACCCTGAGCAATGCCAGTGTGGCGGACATGA
CGCAGGACATGCAGGTGCGGGTCCGAATGGAGGTGCTTGAACGCACCGTA
ACCGGATACAAGGACATGTGTGCCACGTTGGAACGCGAGATTCAATCCTT
GCGCCAGCAGGAGCTTGTGAACGAACCTGCCGGAGAGGGATACGATAGCG
TCAAAAAGGAACTGGATACGCTGCGGATGGAAAACGATCGGCTGCGTCGG
CGCAAGGAGGAACTGGAGATGGAGATGATGCACCGCTGCTTGCGGGGCGA
CTTCAACATGAAGGACTTCAAGGTGGTACACTTTAGTGAAAATCCCGCTG
CCGAAGCCTATGAGTCCACCAAAAACATGATGGAGAAGCTGCAGGCGGAG
ATTGAGCGACTCAAGCGGCGCAACAAGAAGTTGGAGGACGATAACGAGCA
AAGGCTCAATGAAACCACCAGCACGGGCGGCATGACACTGAACTTTAAGG
AGTTCAATCAACTTCAAGCCGAATTAGAGTCCGCCAATGGCAAGATGCGG
AAGATGAGGGATTGCTTCAAGGCGGCCCGAGAGGAGTTCCGCGATGTGTG
CTACATGCTGCTAGGCTATAGGATCGATCGAATCGGTGCCAACAGCAACT
ATCGCATATCGAGCATGTTTGCAGAGGGACCGGATGACTATCTGGACATC
AGCCTCAACGAATCGAACTGTTTGGCGCTACTGGAGTCGCCATATTCGCA
CACATTCAATCCACCTATTGATCAGCAGCTGGCAGCCAGCAACTTTCCCG
CATTCTTTTCCGCCCTCACCCTAGAACTATTCCAAAAGGCCACTGTCACG
ATGACTTAGAAGCTTTCTAGACCAT
BS26084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mad1-RA | 2193 | CG2072-PA | 1..2193 | 17..2209 | 10950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mad1-RA | 2439 | CG2072-RA | 109..2301 | 17..2209 | 10950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9290226..9291280 | 1192..138 | 5260 | 99.9 | Minus |
| 2R | 25286936 | 2R | 9289361..9290172 | 2004..1193 | 4060 | 100 | Minus |
| 2R | 25286936 | 2R | 9289095..9289300 | 2209..2004 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 9291337..9291457 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:54:05 has no hits.
BS26084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:35:05 Download gff for
BS26084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad1-RA | 98..2290 | 17..2209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:19 Download gff for
BS26084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad1-RA | 109..2301 | 17..2209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:33 Download gff for
BS26084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad1-RA | 109..2301 | 17..2209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:33 Download gff for
BS26084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9289095..9289299 | 2005..2209 | 100 | <- | Minus |
| 2R | 9289361..9290172 | 1193..2004 | 100 | <- | Minus |
| 2R | 9290226..9291280 | 138..1192 | 99 | <- | Minus |
| 2R | 9291337..9291457 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:19 Download gff for
BS26084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5176600..5176804 | 2005..2209 | 100 | <- | Minus |
| arm_2R | 5176866..5177677 | 1193..2004 | 100 | <- | Minus |
| arm_2R | 5177731..5178785 | 138..1192 | 99 | <- | Minus |
| arm_2R | 5178842..5178962 | 17..137 | 100 | | Minus |
BS26084.pep Sequence
Translation from 16 to 2208
> BS26084.pep
MDDIRSSIDDMMDRFNDSITHSAPKKLLFNRLSASFDLGVSPNKRRRERE
SPERSLNDTASSLNMPANDSMASLQNSKLRTELIETKAIVIQLRNEIEKK
SREHKEAILLAENKSTALKDQCDITSKKNLELQDDLKALRKRELVLKNEA
SRATAELNQLRLKFDESTLKLQKEKYLQKEDARDVHLCINNELSEYRRIA
QRADLELQSTRNELERLRQLNEELQARASGFEQLRANHEKQTQSLKVAND
RIQELEFEIQSYSDWKEVVKTSRERLASVPDLLAEVEHLRSHNKHLNTLI
GDKLLLEEQVYDYKTRLEREEGARAEAASLQVKLLHMEQELKEWVKVAQD
HCLANTLVSPMALRSRIEQLLKEDIIHVAEKTSSASDTKHLNTTIRDLEH
KCAIYLKNIEDLNIGLKRHKNFKERLQRKLITVSKERDFYKQLVENFDKD
TTLSNASVADMTQDMQVRVRMEVLERTVTGYKDMCATLEREIQSLRQQEL
VNEPAGEGYDSVKKELDTLRMENDRLRRRKEELEMEMMHRCLRGDFNMKD
FKVVHFSENPAAEAYESTKNMMEKLQAEIERLKRRNKKLEDDNEQRLNET
TSTGGMTLNFKEFNQLQAELESANGKMRKMRDCFKAAREEFRDVCYMLLG
YRIDRIGANSNYRISSMFAEGPDDYLDISLNESNCLALLESPYSHTFNPP
IDQQLAASNFPAFFSALTLELFQKATVTMT*
BS26084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mad1-PA | 730 | CG2072-PA | 1..730 | 1..730 | 3678 | 100 | Plus |
| lva-PD | 2779 | CG6450-PD | 687..1286 | 59..597 | 216 | 23.2 | Plus |
| lva-PC | 2779 | CG6450-PC | 687..1286 | 59..597 | 216 | 23.2 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 631..1216 | 43..632 | 199 | 19.6 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 634..1219 | 43..632 | 199 | 19.6 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 296..747 | 204..619 | 172 | 21.8 | Plus |
| lva-PD | 2779 | CG6450-PD | 848..1440 | 43..603 | 165 | 18.9 | Plus |
| lva-PC | 2779 | CG6450-PC | 848..1440 | 43..603 | 165 | 18.9 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 533..1130 | 45..644 | 162 | 20.8 | Plus |
