BS26093.complete Sequence
2366 bp assembled on 2011-08-23
GenBank Submission: KX802249
> BS26093.complete
GAAGTTATCAGTCGACATGGTGCACCACAGCAACGAGGATGCCATGAACA
AGATACCCCTGAAGTCCGCCGGCGGATTGGACTCCGACGAGGAGAAGAAT
GGCGGCGAACTCATGCAGGACACTGCCGCCGCCGAGGAGGCGCGTCGCGA
ACAGATGCGCGTGAAAGTTTTGGCCTGGATGAAGAAGCTAACCATCGTGC
TAATCTGCTTTATCGGCATTGCCCTGATCAGCTACGTGATAATTAGCCTG
TGTTTCAGTGACTGGCCTAAATCGACGCCAAATAGAAACAACACAACAAC
CGCAACAACAACGACAGCAACACCAACAACAATAAGCACAGAGGCAACCA
TAACAACAATTGCACCATCAGGATTAGCAACAACAATAAGCACCAGCACA
ACAACAATAGCAACAAGTGCAACACAACAACCACCAACAGCAACAACAAC
AACAACAGCAACCAGAACAACAACCACTAGCAGAACAGATAGCAATCCCA
GCCCCACACCTAAAACATTTCATTTAACAGATGATGAGCAGCAACAGGAA
CCGGAAACGGAAACGGACAACATTGGCAATCTCAATCTGGGAATCACGAG
CACAGCGACCACGCCATCGGACGACGTCTTGCCCAATGTGGCCGCCTCCA
CGGCGGCAACGACAGCGGCACCACCCACCTGGCTAGCGGATCAGATCAAG
ATCGATACCAGCGAACAGTACAACTCGATCCTGGGGGTCTACCAACATGG
AGCCGTGAGTTCCGATAACCTTGAGTGCAGCAAGATCGGCAGCGGCATCC
TGCAGAAGAATGGCAGCGCGGTGGACGCAGCGATCGCCGCCCTTCTGTGC
AACGGACTGCTGACCCTGCAGAGCATGGGCATCGGTGGTGGTCACCTGAT
GAACGTCTATAACCGAAAGGAGCGCCACGCCACCGCCATCGATGCCCGCG
AGGTGGCGCCCTACGAGGCCACCGAGGACATGTTTGCCCAGCAGCCGGAG
AATTCCGACAAGGGACCGCTGAGCATCGCTGTGCCCGGCGAGGTGATGGG
CTACCATGTTGCGCATCAGAAGTTCGGACAGCTGCCGTGGGCGGAACTGG
TGGCGCCATCGCTGGAGCTCTGCGAGAAGGGATACCATGTGTCGCAGCAC
ATGGAACGGGCACTGGATATAGCTTTGCCGTACATCAAGGAGCACGAGCA
GTACCAAATCTATTTGAATGCGGAAACTGGCAAGCCCCATGTCGCCGGAA
CTGTAGTTAAGCCGCCCAAAAATCTCTGCAAGACCTACAAACTTCTGGCC
GAGAATGGACCCATGGACATGTACAATGGAACGATAGCCAAGTTGCTGGC
GGAGGATCTGCAGGACATGGGCAGTATTATTTTGGCCGATGATCTGGAGT
CGTACGAGGCCGATGTAATCAACTCCATCACCATGGACTTGGGTGACGAC
ACCTTGTATGTGGTGCCGCCGGTCAGTTCCGGTTCGGTGGTGGCTCACGT
CCTGGCCATACTGCAGGGCTATAACTTCACGGCACAGGATCTGTCCACGG
AGGAGCTGAAGGCGCGTACCATTCATCGATTTGCCGAAGCCATGAAGTTC
GCCTTTGCCCAGCGTCCAGAATTGGGCGATATGCATTTCATCGATGCACG
AGAGCTGGTTAGCCGGCTGAATAGTCCGGACTTTGGCGATCAGAACCGGG
CCAAGATCAATGATTCCCACGTGCTGCCCGATGCCCAGGCGTATGGAGCC
AACTTCGCCGCCATCGAGGATCTGGATGGTACTTCGAATTTGGTTGTCTT
GGCGCCCAACGGTGATGCCGTCTCAGTGACCAGCTCCATCAATTCCTACT
TTGGCTCCGGATTAATTGGACCCCGTACGGGTATTGTTCTCAACAATGGA
ATGAACGATTTTGCGGTGAAGAATAACATTTTCGCATTGCCCCAGTCGCA
GTCGAATAAAATTGAGGCCCACAAGCGGGCGATGTCCTCGCAATCACCGA
TCCTTCTGGCCGATAAGGATGGCAACATGAAGATGGTCATCGGAGCAGCT
GGAGGCAGCAAGATCATTCCGGCCGTGGTTGAGGTGGCCGCCAATGTTTT
GTGGTTCGGCAAGGATCTACGCCAGGCGGTTGATGCACCGCGCTTCTACC
ATCAACTGATGCCCGATGTCCTGGAGTACGAGGAGGATGGCTTCACGGAA
TCCCTGCTCCAATTGCTGACCAAACGGGGACACAAGTTGAAGTCCATTTC
CGTGAAAACTGGATCTGTGGTCACGGCCATATCGAGAAATGCCACAGCGA
TCTATGCGAATGCCGATTATCGTAAACGCGGCGGAGTTGCAGGTTTCTAG
AAGCTTTCTAGACCAT
BS26093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4829-RC | 2334 | CG4829-PC | 1..2334 | 17..2350 | 11670 | 100 | Plus |
| CG4829-RA | 2334 | CG4829-PA | 1..2334 | 17..2350 | 11670 | 100 | Plus |
| CG4829-RB | 2469 | CG4829-PB | 136..2469 | 17..2350 | 11670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4829-RC | 2892 | CG4829-RC | 203..2536 | 17..2350 | 11670 | 100 | Plus |
| CG4829-RA | 3022 | CG4829-RA | 333..2666 | 17..2350 | 11670 | 100 | Plus |
| CG4829-RB | 3129 | CG4829-RB | 440..2773 | 17..2350 | 11670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16824922..16825563 | 1207..1848 | 3210 | 100 | Plus |
| X | 23542271 | X | 16823586..16824118 | 260..792 | 2665 | 100 | Plus |
| X | 23542271 | X | 16825637..16826138 | 1849..2350 | 2510 | 100 | Plus |
| X | 23542271 | X | 16824357..16824772 | 791..1206 | 2080 | 100 | Plus |
| X | 23542271 | X | 16822633..16822773 | 17..157 | 705 | 100 | Plus |
| X | 23542271 | X | 16823103..16823206 | 157..260 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:57:34 has no hits.
BS26093.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:35:10 Download gff for
BS26093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4829-RC | 199..2532 | 17..2350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:21 Download gff for
BS26093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4829-RB | 440..2773 | 17..2350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:06 Download gff for
BS26093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4829-RB | 440..2773 | 17..2350 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:06 Download gff for
BS26093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16822633..16822772 | 17..156 | 100 | -> | Plus |
| X | 16823103..16823206 | 157..260 | 100 | -> | Plus |
| X | 16823587..16824118 | 261..792 | 100 | -> | Plus |
| X | 16824359..16824772 | 793..1206 | 100 | -> | Plus |
| X | 16824922..16825563 | 1207..1848 | 100 | -> | Plus |
| X | 16825637..16826138 | 1849..2350 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:21 Download gff for
BS26093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16716666..16716805 | 17..156 | 100 | -> | Plus |
| arm_X | 16717136..16717239 | 157..260 | 100 | -> | Plus |
| arm_X | 16717620..16718151 | 261..792 | 100 | -> | Plus |
| arm_X | 16718392..16718805 | 793..1206 | 100 | -> | Plus |
| arm_X | 16718955..16719596 | 1207..1848 | 100 | -> | Plus |
| arm_X | 16719670..16720171 | 1849..2350 | 100 | | Plus |
BS26093.pep Sequence
Translation from 16 to 2349
> BS26093.pep
MVHHSNEDAMNKIPLKSAGGLDSDEEKNGGELMQDTAAAEEARREQMRVK
VLAWMKKLTIVLICFIGIALISYVIISLCFSDWPKSTPNRNNTTTATTTT
ATPTTISTEATITTIAPSGLATTISTSTTTIATSATQQPPTATTTTTATR
TTTTSRTDSNPSPTPKTFHLTDDEQQQEPETETDNIGNLNLGITSTATTP
SDDVLPNVAASTAATTAAPPTWLADQIKIDTSEQYNSILGVYQHGAVSSD
NLECSKIGSGILQKNGSAVDAAIAALLCNGLLTLQSMGIGGGHLMNVYNR
KERHATAIDAREVAPYEATEDMFAQQPENSDKGPLSIAVPGEVMGYHVAH
QKFGQLPWAELVAPSLELCEKGYHVSQHMERALDIALPYIKEHEQYQIYL
NAETGKPHVAGTVVKPPKNLCKTYKLLAENGPMDMYNGTIAKLLAEDLQD
MGSIILADDLESYEADVINSITMDLGDDTLYVVPPVSSGSVVAHVLAILQ
GYNFTAQDLSTEELKARTIHRFAEAMKFAFAQRPELGDMHFIDARELVSR
LNSPDFGDQNRAKINDSHVLPDAQAYGANFAAIEDLDGTSNLVVLAPNGD
AVSVTSSINSYFGSGLIGPRTGIVLNNGMNDFAVKNNIFALPQSQSNKIE
AHKRAMSSQSPILLADKDGNMKMVIGAAGGSKIIPAVVEVAANVLWFGKD
LRQAVDAPRFYHQLMPDVLEYEEDGFTESLLQLLTKRGHKLKSISVKTGS
VVTAISRNATAIYANADYRKRGGVAGF*
BS26093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4829-PC | 777 | CG4829-PC | 1..777 | 1..777 | 3969 | 100 | Plus |
| CG4829-PA | 777 | CG4829-PA | 1..777 | 1..777 | 3969 | 100 | Plus |
| CG4829-PB | 822 | CG4829-PB | 46..822 | 1..777 | 3969 | 100 | Plus |
| CG4829-PE | 732 | CG4829-PE | 126..732 | 171..777 | 3102 | 99.8 | Plus |
| CG4829-PD | 687 | CG4829-PD | 81..687 | 171..777 | 3102 | 99.8 | Plus |
| CG4829-PE | 732 | CG4829-PE | 46..187 | 1..129 | 439 | 68.3 | Plus |
