BS26117.complete Sequence
1514 bp assembled on 2011-08-24
GenBank Submission: KX800995
> BS26117.complete
GAAGTTATCAGTCGACATGACCAGCTCGAGGAATATGCTACTGATGCTGC
TCCTGGTGGCCAGTGCCTCCATACTTCAACTGGAGGCCAAGACCGTGTTC
CGGCGCACAGACAAGATATCGGAGAACTTCAAGCAGTTAGATTTGCCGCC
AGAGGAGATCGATCCCAATGTGGCGCCACCGGAATCGGAGCCGCCCAAGG
TGGAGGATGTCGCTGATGTGGCGGATGAGGTGGTCAATGCCGTGTCGCCT
GCTTCGTCCATCGACGAGAGTGCCAATGAGATAGCCAGCGGTGATGTGGA
TACCCCGAATGCTGCAGCTTCCGTTGCAGAAGCTGTCGCCCCAGCCGCTG
CCGTTCCCGAGGTCGCAGAGGCAGCTGCTCCGGCGGTGGCCACCACTCTA
GCGGCCAAGCCTACCACTGCACCGACCACCGCCAAGCCGGAGAATCCCAT
CAGCAAGTTCTGCAAGTGCTCGGAGAGCCACTGCGACTGCTGCCGGAAGT
TCGGATTGCCATTGCTGCCCAGCGGACCTGGCTGCGCCAAGATCGCCTAT
GTGGGCAACGACGAGATGAGCGTGTCCCTCAAATACGGTGGCATCACCTT
GGCCTCTCGTCGCATCTCCAGCAAGCGGGCTCGCCCCATTTGCGTGGGCC
TGCCCGGCGGCTACTCCAAGTTCTGCGGCAAGGTCTATGGTCTGTCCCGT
TCCAAGGAGTCCAAGGACTTCAAGGCATGCCTGGCCTTTGAACTGCGCTC
CGACGACGAGGTGGAGGCCTCCCTGCGCGTCTCCTGTTTCAAGTTTGGAC
CGGAAGGAGTCCGGGTGGCCGAGGCGGAGCCGTTGCCTGTGAAGCCCAGT
TCGGATGACGATGATGACGACGATGATGACCTCTTTGGATTTGCCGCTGG
TGGCGACGATGACGAGGATGAGGAGGACGACTATGACAGCGACAACGATA
CGGATGCGGATGCCGATGACGACGATGACACCGAGGACTATGCCGATGAT
GACGAGGCCGAGGCGCCCGAGGATGCTGATTACGGTGGCTTTAGTTTGGC
CGGACTTCTGGACGAGCTCGACGATGACGACGATGAGAAGCCGGTTAAGA
AGCCAGCGGCTGCGGCTGCGTCAGCGGCTGCTGACCAAACCCGCGAGCAT
GTAATTGCCGATGGCCAGGTGACCGCGACTACGACGAACGGCGACCAGGT
GCAGAGCAAGGACGATACGGGAGCTCCTGCCGCTGGCGAGGCTGTTGCAG
CTGCTGCACCTGCTGCGCCTGCTGCTCCTCTTGCTGCTCCTGCAGCCGCA
GCACCGATTGAGGGAGAAGTGGCCGCAGCGGTGACACCGGCTACCACAGC
TGCCGCCGATGAAGACTCCACCACGCCCAAGTCCAAGAAGTCCAAGAAGG
CGAAAAAGAACAAGAAGAAGAAGGCCGCCGCAGAGGCGACGGATGAGACT
GGATTCGCCTACGAGCTCCTCAATGGCATCCTGGATTTTTTCAACTGAAA
GCTTTCTAGACCAT
BS26117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15239-RA | 1482 | CG15239-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15239-RA | 1997 | CG15239-RA | 322..1803 | 17..1498 | 7410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3888663..3889542 | 17..896 | 4400 | 100 | Plus |
| X | 23542271 | X | 3889690..3890292 | 896..1498 | 3015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:39:30 has no hits.
BS26117.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:38 Download gff for
BS26117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15239-RA | 318..1798 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:24 Download gff for
BS26117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15239-RA | 318..1798 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:17 Download gff for
BS26117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15239-RA | 322..1802 | 17..1497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:17 Download gff for
BS26117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3888663..3889542 | 17..896 | 100 | -> | Plus |
| X | 3889691..3890291 | 897..1497 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:24 Download gff for
BS26117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3782696..3783575 | 17..896 | 100 | -> | Plus |
| arm_X | 3783724..3784324 | 897..1497 | 100 | | Plus |
BS26117.pep Sequence
Translation from 16 to 1497
> BS26117.pep
MTSSRNMLLMLLLVASASILQLEAKTVFRRTDKISENFKQLDLPPEEIDP
NVAPPESEPPKVEDVADVADEVVNAVSPASSIDESANEIASGDVDTPNAA
ASVAEAVAPAAAVPEVAEAAAPAVATTLAAKPTTAPTTAKPENPISKFCK
CSESHCDCCRKFGLPLLPSGPGCAKIAYVGNDEMSVSLKYGGITLASRRI
SSKRARPICVGLPGGYSKFCGKVYGLSRSKESKDFKACLAFELRSDDEVE
ASLRVSCFKFGPEGVRVAEAEPLPVKPSSDDDDDDDDDLFGFAAGGDDDE
DEEDDYDSDNDTDADADDDDDTEDYADDDEAEAPEDADYGGFSLAGLLDE
LDDDDDEKPVKKPAAAAASAAADQTREHVIADGQVTATTTNGDQVQSKDD
TGAPAAGEAVAAAAPAAPAAPLAAPAAAAPIEGEVAAAVTPATTAAADED
STTPKSKKSKKAKKNKKKKAAAEATDETGFAYELLNGILDFFN*
BS26117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15239-PA | 493 | CG15239-PA | 1..493 | 1..493 | 2515 | 100 | Plus |
| ect-PE | 548 | CG6611-PE | 46..229 | 275..446 | 211 | 34.8 | Plus |
| ect-PD | 280 | CG6611-PD | 46..269 | 275..472 | 209 | 31.7 | Plus |
| ect-PB | 581 | CG6611-PB | 46..216 | 275..433 | 204 | 35.7 | Plus |
| ect-PA | 581 | CG6611-PA | 46..216 | 275..433 | 204 | 35.7 | Plus |
