BS26124.complete Sequence
2543 bp assembled on 2011-09-19
GenBank Submission: KX804269
> BS26124.complete
GAAGTTATCAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGC
TGTGCCAGCTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAG
TTGGGAGAACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAA
CGCTTTCCAGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGG
AGCGCAAGCTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCC
ATGTTGGACACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGAT
CGACCTGGAGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGA
ATCAGAACGCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTG
AAGCATATTTTGCGCAAAACCCAAGTGTTCTTCGATGAGCAAGAAGGCGG
CGTAAACCAAACGACCGAGTCGATGACCCGCGCCTTGATCACGGACGAGG
CGCGCACCGCTGGTGCCTCCATGGGTCCCGTACAGCTCGGCTTCGTGGCT
GGCGTCATCCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGTTGTGGCG
CGCCTGCAGGGGTAACGTCTTCCTGCGACAGGCGATGATTGAGACGCCGC
TGGAGGATCCCACCAATGGCGACCAGGTGCACAAGTCCGTGTTTATAATC
TTCTTCCAGGGTGACCAGCTGAAGACGCGCGTCAAGAAGATCTGCGAGGG
CTTCCGGGCCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGATCGGCGAG
AGATGGCCATGGGTGTGATGACTCGCATCGAAGATCTGAACACCGTGCTC
GGCCAGACGCAGGACCATCGCCATCGTGTGCTGGTCGCTGCGGCCAAGAA
TCTTAAGAACTGGTTCGTCAAGGTGCGCAAGATAAAGGCCATCTACCATA
CGCTGAATCTCTTCAATCTGGACGTGACCCAGAAGTGTCTGATCGCCGAG
TGCTGGGTACCGCTGCTGGACATTGAAACCATCCAGCTGGCCTTGCGCCG
CGGAACCGAAAGATCGGGATCGTCGGTGCCGCCAATTCTCAACCGGATGC
AGACGTTCGAGAATCCACCGACCTACAATCGAACGAATAAGTTTACCAAG
GCCTTTCAGGCATTGATCGATGCCTATGGCGTGGCCAGCTATCGGGAGAT
GAATCCGGCACCCTACACGATCATCACCTTCCCCTTCCTGTTCGCCGTGA
TGTTTGGAGATTTGGGCCACGGAGCTATCATGGCGCTCTTTGGTCTCTGG
ATGATTCGAAAGGAGAAGGGACTGGCGGCTCAGAAGACGGACAACGAGAT
CTGGAACATATTCTTTGGCGGACGGTACATCATCTTCCTCATGGGCGTCT
TCTCCATGTACACGGGTCTTATATACAACGATATATTCTCCAAGTCGCTG
AATATCTTTGGATCGCATTGGCACTTATCCTACAACAAGTCCACCGTGAT
GGAGAACAAGTTCCTGCAGTTGAGCCCGAAAGGCGACTACGAGGGCGCTC
CGTATCCGTTCGGCATGGATCCCATTTGGCAGGTGGCGGGAGCCAATAAG
ATCATCTTCCACAACGCTTACAAGATGAAGATCTCGATCATTTTCGGTGT
TATTCACATGATCTTCGGTGTGGTGATGAGCTGGCACAATCATACGTATT
TCAGGAACAGGATCTCCCTGCTCTACGAGTTCATTCCCCAGCTGGTCTTC
CTGCTGCTGCTTTTCTTCTACATGGTTTTGTTGATGTTCATCAAGTGGAT
CAAGTTTGCCGCCACCAATGATAAGCCCTACTCCGAAGCCTGTGCGCCTT
CAATCCTGATCACCTTTATCGACATGGTGCTTTTTAACACGCCCAAGCCA
CCTCCGGAGAACTGTGAAACCTATATGTTCATGGGCCAGCACTTTATCCA
GGTGTTATTCGTCCTGGTTGCCGTCGGCTGCATTCCCGTAATGTTGCTGG
CCAAGCCGCTGCTCATCATGCAGGCCCGCAAGCAGGCGAACGTACAGCCC
ATTGCAGGAGCAACTTCAGATGCAGAAGCCGGCGGCGTGTCCAATAGCGG
CTCACACGGTGGTGGCGGTGGCCATGAGGAGGAAGAGGAGCTCTCTGAGA
TCTTCATTCACCAGAGCATCCACACCATCGAGTACGTCCTAGGTTCGGTA
TCCCACACCGCTTCCTATCTGCGATTGTGGGCGCTTTCCTTGGCCCATGC
CCAGTTGGCTGAGGTGCTGTGGACCATGGTCCTATCGATTGGCTTGAAGC
AGGAAGGGCCGGTGGGTGGCATTGTATTGACCTGCGTGTTTGCCTTCTGG
GCCATTCTCACCGTTGGCATTCTGGTACTCATGGAGGGCTTGTCTGCCTT
CCTGCACACCCTGCGTCTCCATTGGGTCGAGTTCCAGAGCAAGTTCTACA
AGGGCCAGGGTTACGCCTTCCAACCCTTCTCGTTTGATGCCATCATAGAA
AACGGAGCTGCCGCCGCCGAGGAGTAAAAGCTTTCTAGACCAT
BS26124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RK | 2511 | CG1709-PK | 1..2511 | 17..2527 | 12555 | 100 | Plus |
| Vha100-1-RD | 2511 | CG1709-PD | 1..2511 | 17..2527 | 12555 | 100 | Plus |
| Vha100-1-RB | 2511 | CG1709-PB | 1..2511 | 17..2527 | 12555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RK | 2902 | CG1709-RK | 103..2614 | 17..2528 | 12560 | 100 | Plus |
| Vha100-1-RD | 3009 | CG1709-RD | 205..2716 | 17..2528 | 12560 | 100 | Plus |
| Vha100-1-RB | 2907 | CG1709-RB | 103..2614 | 17..2528 | 12560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29135262..29136417 | 668..1823 | 5780 | 100 | Plus |
| 3R | 32079331 | 3R | 29136482..29136702 | 1824..2044 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 29137076..29137286 | 2042..2252 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 29132126..29132303 | 134..311 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29137352..29137524 | 2253..2425 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 309..439 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 540..668 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 17..133 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 29137579..29137687 | 2420..2528 | 530 | 99.1 | Plus |
| 3R | 32079331 | 3R | 29133859..29133961 | 438..540 | 515 | 100 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 15..242 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 247..149 | 315 | 87.9 | Minus |
| 3R | 32079331 | 3R | 18390664..18390771 | 2479..2372 | 285 | 84.3 | Minus |
| 2L | 23513712 | 2L | 11742868..11742996 | 1346..1474 | 270 | 80.6 | Plus |
| 2R | 25286936 | 2R | 18909062..18909162 | 2447..2347 | 250 | 83.2 | Minus |
| 3R | 32079331 | 3R | 18392349..18392428 | 1008..929 | 235 | 86.2 | Minus |
| 3R | 32079331 | 3R | 18388331..18388441 | 1273..1163 | 225 | 80.2 | Minus |
| 3R | 32079331 | 3R | 18391886..18392011 | 1471..1346 | 225 | 78.6 | Minus |
| 2R | 25286936 | 2R | 18910296..18910374 | 1273..1195 | 215 | 84.8 | Minus |
| 3R | 32079331 | 3R | 18391691..18391807 | 1672..1553 | 205 | 80 | Minus |
| 2L | 23513712 | 2L | 11743624..11743709 | 2147..2232 | 205 | 82.6 | Plus |
| 3R | 32079331 | 3R | 18392085..18392193 | 1272..1164 | 185 | 78 | Minus |
Blast to na_te.dros performed 2014-11-27 08:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6865 | 1788..1742 | 127 | 74.5 | Minus |
BS26124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:17:20 Download gff for
BS26124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RG | 246..768 | 17..539 | 100 | -> | Plus |
| Vha100-1-RG | 811..2796 | 540..2525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:00 Download gff for
BS26124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RB | 103..2611 | 17..2525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:46 Download gff for
BS26124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RB | 103..2611 | 17..2525 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:46 Download gff for
BS26124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29137584..29137684 | 2425..2525 | 100 | | Plus |
| 3R | 29131709..29131825 | 17..133 | 100 | -> | Plus |
| 3R | 29132126..29132302 | 134..310 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 311..439 | 100 | -> | Plus |
| 3R | 29133861..29133961 | 440..540 | 100 | -> | Plus |
| 3R | 29135049..29135175 | 541..667 | 100 | -> | Plus |
| 3R | 29135262..29136417 | 668..1823 | 100 | -> | Plus |
| 3R | 29136482..29136699 | 1824..2041 | 100 | -> | Plus |
| 3R | 29137076..29137286 | 2042..2252 | 100 | -> | Plus |
| 3R | 29137352..29137523 | 2253..2424 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:00 Download gff for
BS26124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24957431..24957547 | 17..133 | 100 | -> | Plus |
| arm_3R | 24957848..24958024 | 134..310 | 100 | -> | Plus |
| arm_3R | 24958098..24958226 | 311..439 | 100 | -> | Plus |
| arm_3R | 24959583..24959683 | 440..540 | 100 | -> | Plus |
| arm_3R | 24960771..24960897 | 541..667 | 100 | -> | Plus |
| arm_3R | 24960984..24962139 | 668..1823 | 100 | -> | Plus |
| arm_3R | 24962204..24962421 | 1824..2041 | 100 | -> | Plus |
| arm_3R | 24962798..24963008 | 2042..2252 | 100 | -> | Plus |
| arm_3R | 24963074..24963245 | 2253..2424 | 100 | -> | Plus |
| arm_3R | 24963306..24963406 | 2425..2525 | 100 | | Plus |
BS26124.pep Sequence
Translation from 16 to 2526
> BS26124.pep
MGSLFRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRK
FVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLEAT
FEKLENELREVNQNAEALKRNFLELTELKHILRKTQVFFDEQEGGVNQTT
ESMTRALITDEARTAGASMGPVQLGFVAGVILRERLPAFERMLWRACRGN
VFLRQAMIETPLEDPTNGDQVHKSVFIIFFQGDQLKTRVKKICEGFRATL
YPCPEAPADRREMAMGVMTRIEDLNTVLGQTQDHRHRVLVAAAKNLKNWF
VKVRKIKAIYHTLNLFNLDVTQKCLIAECWVPLLDIETIQLALRRGTERS
GSSVPPILNRMQTFENPPTYNRTNKFTKAFQALIDAYGVASYREMNPAPY
TIITFPFLFAVMFGDLGHGAIMALFGLWMIRKEKGLAAQKTDNEIWNIFF
GGRYIIFLMGVFSMYTGLIYNDIFSKSLNIFGSHWHLSYNKSTVMENKFL
QLSPKGDYEGAPYPFGMDPIWQVAGANKIIFHNAYKMKISIIFGVIHMIF
GVVMSWHNHTYFRNRISLLYEFIPQLVFLLLLFFYMVLLMFIKWIKFAAT
NDKPYSEACAPSILITFIDMVLFNTPKPPPENCETYMFMGQHFIQVLFVL
VAVGCIPVMLLAKPLLIMQARKQANVQPIAGATSDAEAGGVSNSGSHGGG
GGHEEEEELSEIFIHQSIHTIEYVLGSVSHTASYLRLWALSLAHAQLAEV
LWTMVLSIGLKQEGPVGGIVLTCVFAFWAILTVGILVLMEGLSAFLHTLR
LHWVEFQSKFYKGQGYAFQPFSFDAIIENGAAAAEE*
BS26124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-PK | 836 | CG1709-PK | 1..836 | 1..836 | 4363 | 100 | Plus |
| Vha100-1-PD | 836 | CG1709-PD | 1..836 | 1..836 | 4363 | 100 | Plus |
| Vha100-1-PB | 836 | CG1709-PB | 1..836 | 1..836 | 4363 | 100 | Plus |
| Vha100-1-PG | 850 | CG1709-PG | 1..850 | 1..836 | 4338 | 98.4 | Plus |
| Vha100-1-PJ | 852 | CG1709-PJ | 1..852 | 1..836 | 4325 | 98.1 | Plus |
