BS26126.complete Sequence
3887 bp assembled on 2011-09-19
GenBank Submission: KX800694
> BS26126.complete
GAAGTTATCAGTCGACATGAGGCCGCCCAGGAGCAATACGAAAGCAGCAT
TTTCCTCGCTTCAGTTTGGATTGTTATGCCTCCTATTGCTGGTCAATAAT
GGCATTAAATCGGTGCAAGCAGACGCCTTCACGGACTATTTCTCCGACTA
CGATTGCAACCAGCCGCTGATGGAAAGAGCCGTCCTCACGGCCACATCAT
CCTTGACGGAAAGAGGACCCGACAAAGCACGACTAAACGCTGGCACCTCG
TGGTCCGCGAAGAACTCGGATTTCGACCAGCGTCTGATTATTGACCTGGG
CGTGGTGCGGAACGTGACGCACATCGCCCTGCAAGGACGACCACATAGCA
ATGAGTACGTCACCGAGTACACCATTAGCTATGGCATAACCGATCTAGAG
TTTGCCGACTATAAAGAGCCGGGCGGCAATGTCAAGATGTTCAAGGGCAA
CTCCGATGGCAACTCTATCCATTACAACGTCTTCGAGGTGCCCATTATTG
CCCAATGGGTGAGGATCAATCCCACCAGGTGGCACGATCGTATTTCCATG
CGTGTGGAGCTCTACGGCTGCGATTACATCTCTGAAAACCTATACTTTAA
TGGCACTGGCTTGGTGCGCTATGATCTGAGGCGGGAACCCATTACCTCCA
CCAAAGAGTCCATCCGCTTCCGCTTCAAGACGGCCTTTGCCAACGGAGTG
ATGATGTATTCGCGTGGCACACAAGGGGATTACTATGCCCTGCAGCTTAA
GGACAACAAAATGGTGCTGAATTTGGATTTGGGATCGCGGGTGATGACCT
CCTTATCGGTGGGCAGCCTGCTGGATGATAATGTGTGGCATGACGTTGTG
ATCTCAAGGAATCAAAGGGACATAATCTTCTCAGTGGATCGTGTCATCGT
AAGAGGACGCATCCAAGGCGAGTTCACACGACTGAATCTTAATAGGGAGC
TGTATCTAGGTGGTGTGCCCAACGTACAAGAGGGCTTGATTGTCCAACAA
AATTTCTCCGGCTGCTTAGAAAACATCTACTTTAATTCGACCAACTTTAT
TCGAGTGATGAAAGACAGCACTGAACTGGGAGAGGGATATCTCTTCACTA
GGGTAAACACGATCTACGCGTGTCCTTCGCCTCCGATTTATCCGGTGACC
TTCACTACCCGTTCGTCGTTCGTCCGTTTGAAGGGTTATGAAAATTCGCA
GCGTCTTAACGTCTCCTTCTATTTCCGTACTTACGAGGAAACTGGAGTAA
TGCTGCATCACGACTTCTATTCGGGTGGTTATCTAAAGGTCTTTTTGGAG
TTTGGCAAAGTGAAAATTGATCTTAAAGTCAAGGACAAAGCGCGAATCAT
TCTGGACAACTACGATGATCAGTTCAATGATGGCAAATGGCATTCGTTCG
TTATATCCATCGAAAAGAATCGCTTGATTTTAAATATTGATCAGAGACCG
ATGACCACAACAAAGAGCATGCAGGTTGCCACTGGAGCACAGTACTATAT
TGCTGGTGGAAAGGACAAAAATGGATTTGTCGGTTGCATGCGCTTAATTT
CGGTGGATGGAAATTACAAATTACCGCAGGACTGGGTGAAGGGCGAGGAG
GTTTGCTGTGGCGATGATGTCGTCGTCGATGCCTGCCAGATGATTGATCG
CTGCAACCCGAATCCTTGCCAGCATAAGGGACTTTGTCACCAAAACTCCA
GGGAGTTCTTCTGTGATTGCGGACATACTGGCTACGCCGGAGCTGTTTGC
CATACATCAAACAATCCATTGTCCTGCTTGGCTCTCAAGAATGTCCAGCA
TGTGCAGCAGCGTGTGAACTTGAATCTCGATGTGGATGGCAGTGGTCCCC
TAGAACCTTTCCCAGTGACCTGCGAGTTCTACTCGGATGGACGCGTGATT
ACCACCCTCAGTCACAGTCAAGAGCACACCACAACAGTAGATGGTTTTCA
GGAGCCTGGCTCCTTTGAGCAGTCCATCATGTACGATGCCAACCAACTGC
AAATTGAAGCTCTGTTGAATCGGTCTCATAGCTGCTGGCAGCGCCTGAGC
TACTCCTGCCGCTCCTCCCGACTCTTCAACTCGCCATCTGAGGCCGGAAA
TTTCCGTCCCTTCTCTTGGTGGATATCTCGCCACAATCAACCGATGGACT
ATTGGGCTGGAGCTCTACCTGGCTCTCGTAAGTGCGAATGTGGAATTCTG
GGCAAGTGTCACGATCCCACAAAGTGGTGCAACTGCGATTCGAACAGTCT
GGAATGGATGGAGGATGGTGGTGATATCCGGGAGAAGGAATACCTTCCCG
TGCGAGCTGTGAAGTTTGGCGACACTGGAACTCCGTTGGACGAGAAAATG
GGTCGCTATACTCTGGGACCGCTGCGCTGTGAGGGCGATGATCTGTTCAG
TAATGTGGTGACCTTCCGCATTGCCGATGCTTCTATTAACTTACCACCAT
TCGATATGGGTCACTCTGGAGATATTTATCTGGAATTCCGTACCACACAA
GAGAACTCTGTGATCTTCCATGCTACCGGACCTACAGATTACATTAAGCT
AAGTCTCAATGGCGGCAACAAATTGCAATTCCAGTATCAGGCGGGAAGTG
GTCCACTGGGCGTTAATGTGGGCACAAGCTATCACCTGAACGACAACAAC
TGGCACACGGTTAGTGTCGAGCGCAACAGGAAGGAGGCTCGTCTGGTGGT
TGATGGTTCTATCAAGGCTGAGGTTCGAGAGCCGCCGGGTCCAGTGCGTG
CACTTCACTTAACATCGGATCTGGTGATTGGCGCCACTACTGAGTACCGC
GATGGTTACGTAGGATGCATTCGTGCACTGCTGCTGAACGGAAAGATGGT
TGACTTGAAGGAATACTCCAAGCGTGGATTATACGGCATCAGCACCGGTT
GCGTGGGTCGCTGTGAATCAAATCCATGCCTAAACAATGGTACTTGTATC
GAGCGATACGATGGCTACAGCTGCGATTGCCGTTGGAGCGCATTCAAAGG
ACCTATTTGCGCAGATGAGATTGGTGTCAACCTACGCTCCAGTTCGATTA
TTCGCTACGAGTTCGAGGGTTCCTTCCGCTCCACAATTGCCGAGAACATT
CGCGTCGGTTTCACCACCACCATTCCGAAGGGATTCCTGCTTGGCTTCTC
TTCCAACCTAACTGGCGAATATTTAACTATTCAAATATCGAATTCTGGTC
ATTTGCGTTGTGTATTTGATTTCGGTTTCGAGAGGCAGGAAATCATATTC
CCCAAAAAACATTTTGGCCTGGGTCAGTACCACGATATGCACTTTATGCG
CAAGAATGGTGGATCCACAGTGGTTTTGAAGGTTGACAACTACGAGCCGG
TCGAGTATAATTTTGATATTAAGGCCTCAGCGGATGCTCAATTCAACAAT
ATCCAGTACATGTACATTGGCAAAAATGAATCTATGACAGATGGCTTTGT
GGGTTGTGTGTCGCGAGTTCAATTCGATGATATCTATCCACTGAAGCTGA
TGTTCCAGCAGAATCCTCCCAAGAATGTCAAATCATTGGGCACTCAATTG
ACTGAAGATTTCTGCGGAGTGGAGCCAGTTACGCATCCGCCCATTGAAAT
CGAGACTAGGCCACCACCCTTGGTGGATGAGGAGAAGTTGCGCAAGGCAT
ACAATGAAGTTGACTCTGTGCTGTTGGCATGTCTGCTTGTGATTCTCTTC
CTGCTGCTGATCCTTATGTTCTTCCTTATCGGTCGCTATTTGCACCGACA
CAAAGGCGACTACCTGACGCACGAGGATCAGGGTGCCGATGGAGCTGACG
ATCCAGACGATGCTGTCCTGCACTCAACTACTGGCCATCAAGTCAGGAAG
CGAACAGAGATCTTTATCTAAAAGCTTTCTAGACCAT
BS26126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-IV-RB | 3855 | CG6827-PB | 1..3855 | 17..3871 | 19275 | 100 | Plus |
| Nrx-IV-RA | 3855 | CG6827-PA | 419..3855 | 435..3871 | 17185 | 100 | Plus |
| Nrx-IV-RA | 3855 | CG6827-PA | 1..223 | 17..239 | 1115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-IV-RB | 4940 | CG6827-RB | 337..4192 | 17..3872 | 19280 | 100 | Plus |
| Nrx-IV-RA | 4940 | CG6827-RA | 755..4192 | 435..3872 | 17190 | 100 | Plus |
| Nrx-IV-RA | 4940 | CG6827-RA | 337..559 | 17..239 | 1115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12152380..12153558 | 579..1757 | 5895 | 100 | Plus |
| 3L | 28110227 | 3L | 12154210..12155143 | 2084..3017 | 4655 | 99.9 | Plus |
| 3L | 28110227 | 3L | 12155441..12155790 | 3193..3542 | 1735 | 99.7 | Plus |
| 3L | 28110227 | 3L | 12153951..12154159 | 1884..2092 | 1030 | 99.5 | Plus |
| 3L | 28110227 | 3L | 12151210..12151407 | 239..436 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 12156051..12156242 | 3681..3872 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 12155202..12155384 | 3017..3199 | 915 | 100 | Plus |
| 3L | 28110227 | 3L | 12152175..12152318 | 435..578 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 12155855..12155994 | 3543..3682 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 12153623..12153748 | 1758..1883 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 12148789..12148908 | 120..239 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12146855..12146960 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:29:04 has no hits.
BS26126.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:17:22 Download gff for
BS26126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 281..4133 | 17..3869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:49 Download gff for
BS26126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 337..4189 | 17..3869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:58 Download gff for
BS26126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 337..4189 | 17..3869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:58 Download gff for
BS26126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12146855..12146960 | 17..122 | 100 | -> | Plus |
| 3L | 12148792..12148908 | 123..239 | 100 | -> | Plus |
| 3L | 12151211..12151407 | 240..436 | 100 | -> | Plus |
| 3L | 12152177..12152318 | 437..578 | 100 | -> | Plus |
| 3L | 12152380..12153558 | 579..1757 | 100 | -> | Plus |
| 3L | 12153623..12153748 | 1758..1883 | 100 | -> | Plus |
| 3L | 12153951..12154154 | 1884..2087 | 100 | -> | Plus |
| 3L | 12154214..12155143 | 2088..3017 | 100 | -> | Plus |
| 3L | 12155203..12155382 | 3018..3197 | 100 | -> | Plus |
| 3L | 12155446..12155790 | 3198..3542 | 100 | -> | Plus |
| 3L | 12155855..12155992 | 3543..3680 | 100 | -> | Plus |
| 3L | 12156051..12156239 | 3681..3869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:49 Download gff for
BS26126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12145277..12145418 | 437..578 | 100 | -> | Plus |
| arm_3L | 12141892..12142008 | 123..239 | 100 | -> | Plus |
| arm_3L | 12144311..12144507 | 240..436 | 100 | -> | Plus |
| arm_3L | 12148303..12148482 | 3018..3197 | 100 | -> | Plus |
| arm_3L | 12139955..12140060 | 17..122 | 100 | -> | Plus |
| arm_3L | 12145480..12146658 | 579..1757 | 100 | -> | Plus |
| arm_3L | 12146723..12146848 | 1758..1883 | 100 | -> | Plus |
| arm_3L | 12147051..12147254 | 1884..2087 | 100 | -> | Plus |
| arm_3L | 12147314..12148243 | 2088..3017 | 100 | -> | Plus |
| arm_3L | 12148546..12148890 | 3198..3542 | 100 | -> | Plus |
| arm_3L | 12148955..12149092 | 3543..3680 | 100 | -> | Plus |
| arm_3L | 12149151..12149339 | 3681..3869 | 100 | | Plus |
BS26126.pep Sequence
Translation from 16 to 3870
> BS26126.pep
MRPPRSNTKAAFSSLQFGLLCLLLLVNNGIKSVQADAFTDYFSDYDCNQP
LMERAVLTATSSLTERGPDKARLNAGTSWSAKNSDFDQRLIIDLGVVRNV
THIALQGRPHSNEYVTEYTISYGITDLEFADYKEPGGNVKMFKGNSDGNS
IHYNVFEVPIIAQWVRINPTRWHDRISMRVELYGCDYISENLYFNGTGLV
RYDLRREPITSTKESIRFRFKTAFANGVMMYSRGTQGDYYALQLKDNKMV
LNLDLGSRVMTSLSVGSLLDDNVWHDVVISRNQRDIIFSVDRVIVRGRIQ
GEFTRLNLNRELYLGGVPNVQEGLIVQQNFSGCLENIYFNSTNFIRVMKD
STELGEGYLFTRVNTIYACPSPPIYPVTFTTRSSFVRLKGYENSQRLNVS
FYFRTYEETGVMLHHDFYSGGYLKVFLEFGKVKIDLKVKDKARIILDNYD
DQFNDGKWHSFVISIEKNRLILNIDQRPMTTTKSMQVATGAQYYIAGGKD
KNGFVGCMRLISVDGNYKLPQDWVKGEEVCCGDDVVVDACQMIDRCNPNP
CQHKGLCHQNSREFFCDCGHTGYAGAVCHTSNNPLSCLALKNVQHVQQRV
NLNLDVDGSGPLEPFPVTCEFYSDGRVITTLSHSQEHTTTVDGFQEPGSF
EQSIMYDANQLQIEALLNRSHSCWQRLSYSCRSSRLFNSPSEAGNFRPFS
WWISRHNQPMDYWAGALPGSRKCECGILGKCHDPTKWCNCDSNSLEWMED
GGDIREKEYLPVRAVKFGDTGTPLDEKMGRYTLGPLRCEGDDLFSNVVTF
RIADASINLPPFDMGHSGDIYLEFRTTQENSVIFHATGPTDYIKLSLNGG
NKLQFQYQAGSGPLGVNVGTSYHLNDNNWHTVSVERNRKEARLVVDGSIK
AEVREPPGPVRALHLTSDLVIGATTEYRDGYVGCIRALLLNGKMVDLKEY
SKRGLYGISTGCVGRCESNPCLNNGTCIERYDGYSCDCRWSAFKGPICAD
EIGVNLRSSSIIRYEFEGSFRSTIAENIRVGFTTTIPKGFLLGFSSNLTG
EYLTIQISNSGHLRCVFDFGFERQEIIFPKKHFGLGQYHDMHFMRKNGGS
TVVLKVDNYEPVEYNFDIKASADAQFNNIQYMYIGKNESMTDGFVGCVSR
VQFDDIYPLKLMFQQNPPKNVKSLGTQLTEDFCGVEPVTHPPIEIETRPP
PLVDEEKLRKAYNEVDSVLLACLLVILFLLLILMFFLIGRYLHRHKGDYL
THEDQGADGADDPDDAVLHSTTGHQVRKRTEIFI*
BS26126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-IV-PB | 1284 | CG6827-PB | 1..1284 | 1..1284 | 6890 | 100 | Plus |
| Nrx-IV-PA | 1284 | CG6827-PA | 1..1284 | 1..1284 | 6636 | 96.4 | Plus |
| axo-PI | 2047 | CG43225-PI | 476..1311 | 185..1015 | 651 | 25.2 | Plus |
| axo-PD | 2070 | CG43225-PD | 476..1311 | 185..1015 | 651 | 25.2 | Plus |
| axo-PH | 2070 | CG43225-PH | 476..1311 | 185..1015 | 651 | 25.2 | Plus |
| axo-PI | 2047 | CG43225-PI | 1489..1800 | 929..1212 | 196 | 22 | Plus |
| axo-PD | 2070 | CG43225-PD | 1489..1800 | 929..1212 | 196 | 22 | Plus |
| axo-PI | 2047 | CG43225-PI | 220..676 | 768..1191 | 179 | 23.5 | Plus |
| axo-PD | 2070 | CG43225-PD | 220..676 | 768..1191 | 179 | 23.5 | Plus |
