BS26129.complete Sequence
1709 bp assembled on 2011-09-20
GenBank Submission: KX805238
> BS26129.complete
GAAGTTATCAGTCGACATGGTGAAAATGCTCGATCTGGACCGTCACGCAG
AGTGCCCACTGTGGGCGGCACTGGCCTCCTCGGATGTCCCATGGACGGGA
ATGGACTACGCCTGCCTGAACGTGCTCAGTATCTACTGCAAAGTATTCGA
TAGGAAGGAAATATACGATCTCATCGTGAGGAAAACCTGCCAGTCCTGCA
AATGTCCTCGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAACGTG
CATGAGCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGTGGA
GGCGCGGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCTCCT
CGCGCATCAACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCCCGG
CTGGGCAGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCAGCT
GCCCAAACAGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGCAGC
ACGAGGCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCACTG
GACATAGCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCACTG
TGATAACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGTTTG
TGGAGAGCGTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGCAAC
TCGCTACTCGTGGACCTCACCTACTGCGTCCACGACGACAAGGTCTACTG
CGAGCGCCACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTGATG
AGTTAATTTTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGGCAC
TCCGGACACTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACAGCG
TTACGTCATCCGGGACGATCATCCGTACTGCATCAAGTGCTACGAGAATG
TGTTCGCCAATACGTGCGAGGAGTGCAACAAGATCATTGGCATCGACTCC
AAGGATCTGTCCTACAAAGACAAGCACTGGCACGAGGCCTGTTTCCTGTG
CTTCAAGTGCCATCTGTCGCTGGTGGACAAGCAGTTTGGAGCCAAGGCGG
ATAAGATCTACTGTGGAAACTGCTACGATGCCCAGTTTGCGTCCCGCTGC
GATGGCTGCGGCGAAGTTTTCCGCGCAGGCACCAAGAAAATGGAGTATAA
AACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGTCTGCAAGACGG
CCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGATCTATTGCGCC
GGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAGTGCAATAAGGT
CATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTGGCATCGCGAGT
GCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCCAGCGATTCACC
AGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGCGAGCTCTTTGC
CAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCATTGGCGGCACAC
GCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACTGCTTTGTGTGT
GCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATCACCGACGGACC
CGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGATGTAAAAGCTTT
CTAGACCAT
BS26129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RD | 1677 | CG42679-PD | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| Lmpt-RH | 1677 | CG42679-PH | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| Lmpt-RM | 1680 | CG42679-PM | 165..1680 | 178..1693 | 7580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RD | 2860 | CG32171-RD | 291..1967 | 17..1693 | 8385 | 100 | Plus |
| Lmpt-RH | 2804 | CG32171-RH | 235..1911 | 17..1693 | 8385 | 100 | Plus |
| Lmpt-RM | 2905 | CG42679-RM | 497..2012 | 178..1693 | 7580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16896802..16897180 | 179..557 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 16897380..16897628 | 554..802 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 16912127..16912330 | 801..1004 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 16921178..16921367 | 1347..1536 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 16913222..16913399 | 1002..1179 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 16920879..16921053 | 1176..1350 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 16896436..16896600 | 17..181 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 16921430..16921594 | 1529..1693 | 810 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:08:13 has no hits.
BS26129.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:39 Download gff for
BS26129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RD | 289..1963 | 17..1691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:04 Download gff for
BS26129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RH | 235..1909 | 17..1691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:41 Download gff for
BS26129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RH | 235..1909 | 17..1691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:41 Download gff for
BS26129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16920882..16921051 | 1179..1348 | 100 | -> | Plus |
| 3L | 16921180..16921366 | 1349..1535 | 100 | -> | Plus |
| 3L | 16921437..16921592 | 1536..1691 | 100 | | Plus |
| 3L | 16896804..16897180 | 181..557 | 100 | -> | Plus |
| 3L | 16897384..16897628 | 558..802 | 100 | -> | Plus |
| 3L | 16912129..16912329 | 803..1003 | 100 | -> | Plus |
| 3L | 16896436..16896599 | 17..180 | 100 | -> | Plus |
| 3L | 16913224..16913398 | 1004..1178 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:04 Download gff for
BS26129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16914280..16914466 | 1349..1535 | 100 | -> | Plus |
| arm_3L | 16905229..16905429 | 803..1003 | 100 | -> | Plus |
| arm_3L | 16906324..16906498 | 1004..1178 | 100 | -> | Plus |
| arm_3L | 16913982..16914151 | 1179..1348 | 100 | -> | Plus |
| arm_3L | 16889536..16889699 | 17..180 | 100 | -> | Plus |
| arm_3L | 16889904..16890280 | 181..557 | 100 | -> | Plus |
| arm_3L | 16890484..16890728 | 558..802 | 100 | -> | Plus |
| arm_3L | 16914537..16914692 | 1536..1691 | 100 | | Plus |
BS26129.pep Sequence
Translation from 16 to 1692
> BS26129.pep
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM*
BS26129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-PD | 558 | CG32171-PD | 1..558 | 1..558 | 3160 | 100 | Plus |
| Lmpt-PH | 558 | CG32171-PH | 1..558 | 1..558 | 3160 | 100 | Plus |
| Lmpt-PM | 559 | CG42679-PM | 56..559 | 55..558 | 2867 | 100 | Plus |
| Lmpt-PN | 529 | CG42679-PN | 26..529 | 55..558 | 2867 | 100 | Plus |
| Lmpt-PB | 559 | CG32171-PB | 56..559 | 55..558 | 2867 | 100 | Plus |
