Clone BS26139 Report

Search the DGRC for BS26139

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:261
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG32280-RA
Protein status:BS26139.pep: full length peptide match
Sequenced Size:425

Clone Sequence Records

BS26139.complete Sequence

425 bp assembled on 2011-08-24

GenBank Submission: KX802648

> BS26139.complete
GAAGTTATCAGTCGACATGAGTAAACCTGGCAGTGCTCCTCCGCAGTTCA
CCTATGTGCCGCCCCCTTCGGCCCCGCCCTCTTACCAGGAGGCGGTGGGC
GGAGTGAAGCCGGTGGGTCCATATACGCCCGTGGTGGCGCCCGCAACCAC
GGCAAATACCACGATTGTGACCACGGTTGTGCCCATTAGCCGCACTTCGA
CGCACATGATCTGTCCATCGTGCCATGCCGAGATCGAGACGACTACGCGC
ACCGAGCCGGGAATGATTGCCTACTTGTCCGGATTTTTGATTGCCCTATT
TGGTTGCTGGCTGGGATGCTGCCTAATACCTTGCTGCATCGACGACTGCA
TGGATGTGCATCACTCGTGCCCCAACTGCCGCGCATATTTGGGGCGATAC
CGTCGATAGAAGCTTTCTAGACCAT

BS26139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32280-RD 393 CG32280-PD 1..393 17..409 1965 100 Plus
CG32280-RC 393 CG32280-PC 1..393 17..409 1965 100 Plus
CG32280-RB 393 CG32280-PB 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32280-RD 1279 CG32280-RD 245..639 15..409 1975 100 Plus
CG32280-RC 1440 CG32280-RC 406..800 15..409 1975 100 Plus
CG32280-RB 1144 CG32280-RB 110..504 15..409 1975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3167977..3168265 15..303 1445 100 Plus
3L 28110227 3L 3168334..3168440 303..409 535 100 Plus
Blast to na_te.dros performed 2014-11-26 16:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 2582..2683 378..275 118 61 Minus

BS26139.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:33 Download gff for BS26139.complete
Subject Subject Range Query Range Percent Splice Strand
CG32280-RC 408..800 17..409 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:39 Download gff for BS26139.complete
Subject Subject Range Query Range Percent Splice Strand
CG32280-RA 79..471 17..409 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:38 Download gff for BS26139.complete
Subject Subject Range Query Range Percent Splice Strand
CG32280-RB 112..504 17..409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:38 Download gff for BS26139.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3167979..3168265 17..303 100 -> Plus
3L 3168335..3168440 304..409 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:39 Download gff for BS26139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3167979..3168265 17..303 100 -> Plus
arm_3L 3168335..3168440 304..409 100   Plus

BS26139.pep Sequence

Translation from 16 to 408

> BS26139.pep
MSKPGSAPPQFTYVPPPSAPPSYQEAVGGVKPVGPYTPVVAPATTANTTI
VTTVVPISRTSTHMICPSCHAEIETTTRTEPGMIAYLSGFLIALFGCWLG
CCLIPCCIDDCMDVHHSCPNCRAYLGRYRR*

BS26139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32280-PD 130 CG32280-PD 1..130 1..130 728 100 Plus
CG32280-PC 130 CG32280-PC 1..130 1..130 728 100 Plus
CG32280-PB 130 CG32280-PB 1..130 1..130 728 100 Plus
CG32280-PA 130 CG32280-PA 1..130 1..130 728 100 Plus
CG13510-PC 129 CG13510-PC 6..127 15..128 217 36.6 Plus