BS26142.complete Sequence
440 bp assembled on 2011-08-24
GenBank Submission: KX800682
> BS26142.complete
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACTAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGTCACGTTCGCCACGTC
GCTCCCGATCGCCCCGCAGCCGCAGCTTCTCGCGCGATCGTCGAAGTCGC
TCGGATTCTCGGGATCGTCATTAAAAGCTTTCTAGACCAT
BS26142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp1-RA | 408 | CG17136-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
| Rbp1-RD | 435 | CG17136-PD | 1..318 | 17..334 | 1590 | 100 | Plus |
| Rbp1-like-RC | 477 | CG1987-PC | 19..224 | 35..240 | 460 | 81.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp1-RA | 773 | CG17136-RA | 149..556 | 17..424 | 2040 | 100 | Plus |
| Rbp1-RD | 1528 | CG17136-RD | 149..466 | 17..334 | 1590 | 100 | Plus |
| Rbp1-RD | 1528 | CG17136-RD | 1218..1311 | 331..424 | 470 | 100 | Plus |
| Rbp1-like-RC | 1456 | CG1987-RC | 208..413 | 35..240 | 460 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10784607..10784925 | 17..335 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 10786155..10786248 | 331..424 | 470 | 100 | Plus |
| X | 23542271 | X | 13384465..13384670 | 240..35 | 460 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:44:08 has no hits.
BS26142.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:44 Download gff for
BS26142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RA | 150..555 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:24 Download gff for
BS26142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RA | 149..554 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:11 Download gff for
BS26142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RA | 149..554 | 17..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:11 Download gff for
BS26142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10784607..10784923 | 17..333 | 100 | -> | Plus |
| 3R | 10786158..10786246 | 334..422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:24 Download gff for
BS26142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6610329..6610645 | 17..333 | 100 | -> | Plus |
| arm_3R | 6611880..6611968 | 334..422 | 100 | | Plus |
BS26142.pep Sequence
Translation from 16 to 423
> BS26142.pep
MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS
GSGRYRSRSPRRSRSPRSRSFSRDRRSRSDSRDRH*
BS26142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp1-PA | 135 | CG17136-PA | 1..135 | 1..135 | 715 | 100 | Plus |
| Rbp1-like-PC | 158 | CG1987-PC | 1..158 | 1..135 | 591 | 75.5 | Plus |
| Rbp1-like-PA | 158 | CG1987-PA | 1..158 | 1..135 | 591 | 75.5 | Plus |
| Rbp1-PD | 144 | CG17136-PD | 1..121 | 1..121 | 580 | 90.9 | Plus |
| Rbp1-like-PB | 247 | CG1987-PB | 1..101 | 1..101 | 479 | 88.1 | Plus |
