Clone BS26143 Report

Search the DGRC for BS26143

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:261
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptrl-RA
Protein status:BS26143.pep: full length peptide match
Sequenced Size:699

Clone Sequence Records

BS26143.complete Sequence

699 bp assembled on 2011-08-24

GenBank Submission: KX804409

> BS26143.complete
GAAGTTATCAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTA
ATGGTACAGGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGG
GGACAAATATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGG
TGAAGGAGCTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACC
AAAGAGTTGCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGT
CAAAGGACTCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAA
CATTATTGATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGA
GAGATGTTTATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTA
CTTAAAACACAGGTAATGGTGCTCCCTGATATTTGGTTAAAATTTATTGA
AAGAATAACTACCATTGATATGTGGTGTATTATCTTGGCCATTACTCCAA
ATACCAAGACTGAGTACAATTGTAGGTTGTCGGACATTTTCAATTATGGA
AGTGATTCGCGTTATGCTTTCATGCGGGCTTTAAAATGAAAGCTTTCTAG
ACCATTCGTGGGGGGGCGAAAGGGGGGAGGTAAGTGGTCTTTATCATATT
TCATAATTATTATGTAAATCTATAAGTATCCTTAAGGTTAATTTTTGAT

BS26143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
rl-RA 573 CG12559-PA 1..573 17..589 2865 100 Plus
rl-RI 1131 CG12559-PI 1..396 17..412 1980 100 Plus
rl-RC 1131 CG12559-PC 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
rl-RA 1412 CG12559-RA 307..880 16..589 2870 100 Plus
rl-RI 2072 CG12559-RI 102..498 16..412 1985 100 Plus
rl-RC 1614 CG12559-RC 126..522 16..412 1985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1080331..1080618 302..589 1440 100 Plus
2R 25286936 2R 1072281..1072441 16..176 805 100 Plus
2R 25286936 2R 1076635..1076761 175..301 635 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:44:58 has no hits.

BS26143.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:45 Download gff for BS26143.complete
Subject Subject Range Query Range Percent Splice Strand
rl-RA 325..900 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:47 Download gff for BS26143.complete
Subject Subject Range Query Range Percent Splice Strand
rl-RA 308..883 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:33 Download gff for BS26143.complete
Subject Subject Range Query Range Percent Splice Strand
rl-RA 308..883 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:33 Download gff for BS26143.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1072282..1072439 17..174 100 -> Plus
2R 1076635..1076761 175..301 100 -> Plus
2R 1080331..1080621 302..594 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:47 Download gff for BS26143.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 198996..199153 17..174 100 -> Plus
2RHet 203349..203475 175..301 100 -> Plus
2RHet 207045..207335 302..594 98   Plus

BS26143.pep Sequence

Translation from 16 to 588

> BS26143.pep
MEEFNSSGSVVNGTGSTEVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYG
MVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILTRFKHENIIDIR
DILRVDSIDQMRDVYIVQCLMETDLYKLLKTQVMVLPDIWLKFIERITTI
DMWCIILAITPNTKTEYNCRLSDIFNYGSDSRYAFMRALK*

BS26143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
rl-PA 190 CG12559-PA 1..190 1..190 980 100 Plus
rl-PI 376 CG12559-PI 1..132 1..132 670 100 Plus
rl-PC 376 CG12559-PC 1..132 1..132 670 100 Plus
rl-PD 376 CG12559-PD 1..132 1..132 670 100 Plus
rl-PE 376 CG12559-PE 1..132 1..132 670 100 Plus