BS26148.complete Sequence
884 bp assembled on 2011-08-24
GenBank Submission: KX804758
> BS26148.complete
GAAGTTATCAGTCGACATGGGCAATGCCGGCTACACTTGCATACGCCGCA
CATTCTGCTGGCTCAACATCATTCTATGGTTATGTAGCTGTGCGTTTTTA
GGAGCGGGACTCTGGTTGCGACTGAGCTACGCGGGATACGCCACTTTGCT
GCCCCAGCACGCAGGTCTGAGTGCGGACACCATCTTCATGGGCATCGGGG
GCACCGGATTTGTGGTCAGCTTCTTTGGCTGCTGCGGCGCCTGGGTGCAA
TCCCGCTGTCTCCTGGTATTGTACTTTATGCTGATTGTAATGCTGTTCAT
GAGCGAGTTCCTGGTTGGCTCCATCGCCTTTCTCTTCCGCGGCGGACTGG
GACGGACTTTGGCCAACGAGCTGCGCTTCGGGATCGAGCGGCATTATAAC
AGCAGCGATCGGGGATCTCTGGTGGCGCCTTCGGTGGCCTCCATTTGGGA
CAGCGTGCAGCAGTCGTTCGAGTGTTGCGGCGTTTCCTCCTACGAGGATT
GGTATGACATTCAGTCGTGGCCAGGCAGGCGCTGGGTGCCAGAGTCCTGC
TGCAGGACCCTCTACGACCAGCGCCAGGTGCTCACCGAAGGATCCGGCGA
CGGAATGATGCGTCCCGACTGCGGCAGATCTGAGAATCCGTCGCTGTGGT
GGGACAAGGGCTGTGCCCACTCGCTGCAGAGCTGGTTCACCGGCCAGCTG
AACGTGGTGGGCGCCGTGGGACTGGGCATCGCCTTTGTCCAGCTGTTCGG
GCTGATCACCTCGATGCTGCTGTTCTGCACGGTGAAGCACAAGCGGGCCT
CGGACACCTACAAGTCATACTCCCCGTCGATTGATCCTCAGACCCGCACC
AGCAGTTGGGAAGATTGAAAGCTTTCTAGACCAT
BS26148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-RC | 864 | CG4690-PC | 1..853 | 17..869 | 4265 | 100 | Plus |
| Tsp5D-RB | 852 | CG4690-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| Tsp5D-RA | 852 | CG4690-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-RC | 1827 | CG4690-RC | 145..997 | 17..869 | 4265 | 100 | Plus |
| Tsp5D-RB | 1827 | CG4690-RB | 145..997 | 17..869 | 4265 | 100 | Plus |
| Tsp5D-RA | 1972 | CG4690-RA | 290..1142 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6069961..6070204 | 869..626 | 1220 | 100 | Minus |
| X | 23542271 | X | 6070521..6070716 | 466..271 | 980 | 100 | Minus |
| X | 23542271 | X | 6070857..6071049 | 271..79 | 965 | 100 | Minus |
| X | 23542271 | X | 6070293..6070454 | 627..466 | 810 | 100 | Minus |
| X | 23542271 | X | 6071805..6071867 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:43:16 has no hits.
BS26148.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:43 Download gff for
BS26148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RB | 145..995 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:01 Download gff for
BS26148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 290..1140 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:51 Download gff for
BS26148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 290..1140 | 17..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:51 Download gff for
BS26148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6069963..6070202 | 628..867 | 100 | <- | Minus |
| X | 6070293..6070453 | 467..627 | 100 | <- | Minus |
| X | 6070521..6070715 | 272..466 | 100 | <- | Minus |
| X | 6070857..6071048 | 80..271 | 100 | <- | Minus |
| X | 6071805..6071867 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:01 Download gff for
BS26148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5964326..5964486 | 467..627 | 100 | <- | Minus |
| arm_X | 5964554..5964748 | 272..466 | 100 | <- | Minus |
| arm_X | 5964890..5965081 | 80..271 | 100 | <- | Minus |
| arm_X | 5965838..5965900 | 17..79 | 100 | | Minus |
| arm_X | 5963996..5964235 | 628..867 | 100 | <- | Minus |
BS26148.pep Sequence
Translation from 16 to 867
> BS26148.pep
MGNAGYTCIRRTFCWLNIILWLCSCAFLGAGLWLRLSYAGYATLLPQHAG
LSADTIFMGIGGTGFVVSFFGCCGAWVQSRCLLVLYFMLIVMLFMSEFLV
GSIAFLFRGGLGRTLANELRFGIERHYNSSDRGSLVAPSVASIWDSVQQS
FECCGVSSYEDWYDIQSWPGRRWVPESCCRTLYDQRQVLTEGSGDGMMRP
DCGRSENPSLWWDKGCAHSLQSWFTGQLNVVGAVGLGIAFVQLFGLITSM
LLFCTVKHKRASDTYKSYSPSIDPQTRTSSWED*
BS26148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-PB | 283 | CG4690-PB | 1..283 | 1..283 | 1549 | 100 | Plus |
| Tsp5D-PA | 283 | CG4690-PA | 1..283 | 1..283 | 1549 | 100 | Plus |
| Tsp5D-PC | 287 | CG4690-PC | 1..283 | 1..283 | 1549 | 100 | Plus |
| Tsp74F-PB | 236 | CG5492-PB | 71..232 | 66..253 | 235 | 26.6 | Plus |
| Tsp74F-PA | 236 | CG5492-PA | 71..232 | 66..253 | 235 | 26.6 | Plus |
