BS26160.complete Sequence
848 bp assembled on 2011-08-24
GenBank Submission: KX800591
> BS26160.complete
GAAGTTATCAGTCGACATGCTGAAGGGTTACAAGACGGATGAGGACAAGA
AGGTGAAGCGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAAATAT
CCGGAGCTCTCCAGCTGGCTGGCGTCTAGTAATGACGGTTACTCGGCGCA
CTGCAAGATCTGCGACATCAATGTCCTCGCCAGACTAGCGTCCATCAAGC
AGCACCTCGCAACGCGGAAACACCAGGAAAGTTTCAAGTACCACAACATT
CTTGCCAAGAATATGATTAAGGGTGAACTTGTCAAAGATGAGCATGACCC
AGACTTGGAGGCCTCCATAATTTCACCCAAAGCAAAGCCCAAAGCCAAAT
CAAAGACCTATCCAAGGCAAAAGCCAAGGAGCAAAATGCAGCCAAAGATC
AAGAACGACACGAAGGTGGAGAGCATGGAGGAGGAGACGGAGGAGGACGA
AATCGCCTCGAACGACTCAATCCTGGATGATTTACTCAGAACAGATCAGC
CCTATCAAGAGCAAGAATTTGAGGTTGAGAACGAGTTCCTCGAAGTACAA
CAGAATGAAACAGATCTCCAGGACCAAGAGGTGGTCTACGAGGAAGAGAT
GATACAGCTCAAGCCGGAAGATACGGAGATTAATAACGAATACCAAGTCG
ACGCGATGACGGAAGACACCATTATTAGTGAATTTGACTTGTTTGGCAAG
AGTTTGGCTCTGCAGCTGAACAACATGGACCTGGAGGACGCACTAATGTG
CCAGGAGCGTCTGCAGGTGGTCCTAACGGAATTTCGCCTGAAGGTGCTCA
AGCGCAAGAGAGAGCAAGCACGATCTTCGTAGAAGCTTTCTAGACCAT
BS26160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)05714-RB | 816 | CG8886-PB | 1..816 | 17..832 | 4080 | 100 | Plus |
| l(2)05714-RC | 783 | CG8886-PC | 209..783 | 258..832 | 2875 | 100 | Plus |
| l(2)05714-RA | 783 | CG8886-PA | 209..783 | 258..832 | 2875 | 100 | Plus |
| l(2)05714-RC | 783 | CG8886-PC | 1..210 | 17..226 | 1050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)05714-RB | 1082 | CG8886-RB | 190..1005 | 17..832 | 4080 | 100 | Plus |
| l(2)05714-RC | 1089 | CG8886-RC | 438..1012 | 258..832 | 2875 | 100 | Plus |
| l(2)05714-RA | 1049 | CG8886-RA | 398..972 | 258..832 | 2875 | 100 | Plus |
| l(2)05714-RC | 1089 | CG8886-RC | 230..439 | 17..226 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4970212..4970786 | 832..258 | 2875 | 100 | Minus |
| 2L | 23513712 | 2L | 4971054..4971296 | 259..17 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:47:45 has no hits.
BS26160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:48 Download gff for
BS26160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05714-RB | 158..973 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:52 Download gff for
BS26160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05714-RB | 158..973 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:39 Download gff for
BS26160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05714-RB | 190..1005 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:39 Download gff for
BS26160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4971054..4971296 | 17..259 | 100 | | Minus |
| 2L | 4970212..4970784 | 260..832 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:52 Download gff for
BS26160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4970212..4970784 | 260..832 | 100 | <- | Minus |
| arm_2L | 4971054..4971296 | 17..259 | 100 | | Minus |
BS26160.pep Sequence
Translation from 16 to 831
> BS26160.pep
MLKGYKTDEDKKVKRLYHQRYRTEWEKYPELSSWLASSNDGYSAHCKICD
INVLARLASIKQHLATRKHQESFKYHNILAKNMIKGELVKDEHDPDLEAS
IISPKAKPKAKSKTYPRQKPRSKMQPKIKNDTKVESMEEETEEDEIASND
SILDDLLRTDQPYQEQEFEVENEFLEVQQNETDLQDQEVVYEEEMIQLKP
EDTEINNEYQVDAMTEDTIISEFDLFGKSLALQLNNMDLEDALMCQERLQ
VVLTEFRLKVLKRKREQARSS*
BS26160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)05714-PB | 271 | CG8886-PB | 1..271 | 1..271 | 1394 | 100 | Plus |
| l(2)05714-PC | 260 | CG8886-PC | 1..260 | 1..271 | 1314 | 95.9 | Plus |
| l(2)05714-PA | 260 | CG8886-PA | 1..260 | 1..271 | 1314 | 95.9 | Plus |
