BS26163.complete Sequence
1124 bp assembled on 2011-08-26
GenBank Submission: KX805812
> BS26163.complete
GAAGTTATCAGTCGACATGGGAGGTACGTTGGCTCGAAGAACGGATACAG
TTATCTCAGCAATCAATATGAGGATCTGTGTCGTGGCCGCATGTCTCCTA
ATGGCATCGCAGGCCACCGGCTACACGATGGATGATCTGTGCCAACAGTG
GTCGGGCTATGGATACATCGGCAATCCGAGCAACTGCCATGCCTGGGGAT
ACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCTGTCCCAACGGCTTG
GTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCTAATACCACGGTGTG
CTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAAATCTCCCATGTATG
TGGCCAATCCGTTGAACTGCACCGAATACGCCTACTGCGATGGCACAGGC
CAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTCTATTCGGCATCCTC
CACAAAATGTATATGGGGACCCGCCTGCCCGCAGGACACCATCTGTCGGT
TCATGTTGTCCAACATCTTTGTAGGCGATCCGAACCAGTGCGGCAACTAC
ATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAATGTTCCAGCACCGC
CAATCCCTACTATAATAAAGCCACTGGCAACTGCCAGTCGACGAATCCGT
GCACCGGCGAAGATTCAAACAGTGGAAACTCTGACCAGTTCACTGTTGGG
CAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTTAAAGCAGCAGATCC
ACTTACTGTAAATGGGGAATCTGTTGACTATAGGTACGTTTCTGATGGTG
TCACCTGCTATGGGTACTACTACTGTGCAGCAGTAAACGCCACTGGCTAT
TGGAACCAATGTCCCACCGGTACCCAATTCAATGCTGGCAAGTGCGTTTC
GCCAGCCTCCTTTGTCTGTACCCATAACCGATGTGGGAACGTTAACAATC
CATTCATGGCAGATGAGGGTTGCAAGAACTACACAATCTGCTCCAGCGGA
ATAACCGGATCATGTCCCACCAATGCGCCGTACTACGACGAGGTGAACAA
TATCTGCACCACCAAAATTCCCGATTACGCCATTTGTAATTCGACGGCTA
GTACATGAAAGCTTTCTAGACCAT
BS26163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6933-RD | 1092 | CG6933-PD | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG6933-RC | 1092 | CG6933-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG6933-RE | 1056 | CG6933-PE | 6..1056 | 58..1108 | 5255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6933-RD | 1413 | CG6933-RD | 209..1300 | 17..1108 | 5460 | 100 | Plus |
| CG6933-RC | 1283 | CG6933-RC | 79..1170 | 17..1108 | 5460 | 100 | Plus |
| CG6933-RE | 1377 | CG6933-RE | 214..1264 | 58..1108 | 5255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20218615..20219665 | 1108..58 | 5255 | 100 | Minus |
| 3L | 28110227 | 3L | 20220061..20220103 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:20 has no hits.
BS26163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 10:14:19 Download gff for
BS26163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RC | 79..1169 | 17..1107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:54 Download gff for
BS26163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RC | 79..1169 | 17..1107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:20 Download gff for
BS26163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RC | 79..1169 | 17..1107 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:20 Download gff for
BS26163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20218616..20219663 | 60..1107 | 100 | <- | Minus |
| 3L | 20220061..20220103 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:54 Download gff for
BS26163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20211716..20212763 | 60..1107 | 100 | <- | Minus |
| arm_3L | 20213161..20213203 | 17..59 | 100 | | Minus |
BS26163.pep Sequence
Translation from 16 to 1107
> BS26163.pep
MGGTLARRTDTVISAINMRICVVAACLLMASQATGYTMDDLCQQWSGYGY
IGNPSNCHAWGYCKNQEVVAWGTCPNGLVFNAQAGSCDYANTTVCSTSAV
ETCSNVKSPMYVANPLNCTEYAYCDGTGQISYGDCGTGGVYSASSTKCIW
GPACPQDTICRFMLSNIFVGDPNQCGNYINCVNGYGTSEKCSSTANPYYN
KATGNCQSTNPCTGEDSNSGNSDQFTVGQTNATACDEEAFKAADPLTVNG
ESVDYRYVSDGVTCYGYYYCAAVNATGYWNQCPTGTQFNAGKCVSPASFV
CTHNRCGNVNNPFMADEGCKNYTICSSGITGSCPTNAPYYDEVNNICTTK
IPDYAICNSTAST*
BS26163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6933-PD | 363 | CG6933-PD | 1..363 | 1..363 | 2049 | 100 | Plus |
| CG6933-PC | 363 | CG6933-PC | 1..363 | 1..363 | 2049 | 100 | Plus |
| CG6933-PE | 351 | CG6933-PE | 1..351 | 13..363 | 1982 | 99.4 | Plus |
| CG6933-PB | 351 | CG6933-PB | 1..351 | 13..363 | 1982 | 99.4 | Plus |
| CG6933-PA | 351 | CG6933-PA | 1..351 | 13..363 | 1982 | 99.4 | Plus |
