BS26165.complete Sequence
959 bp assembled on 2011-08-26
GenBank Submission: KX805901
> BS26165.complete
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGCCACGAGAAGTGCACGTTCCACCACGACC
TGGAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATG
GCACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCG
CCAGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACT
TCACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTT
TTCGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTT
CTCCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCG
GTTATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATT
GTCGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCA
GATCGCAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGG
TCGTAGAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATC
AACAGCAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCC
CAAGACCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAATAGAAGCTTT
CTAGACCAT
BS26165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RC | 927 | CG9441-PC | 1..927 | 17..943 | 4635 | 100 | Plus |
Pu-RA | 975 | CG9441-PA | 352..975 | 320..943 | 3120 | 100 | Plus |
Pu-RB | 822 | CG9441-PB | 199..822 | 320..943 | 3120 | 100 | Plus |
Pu-RA | 975 | CG9441-PA | 1..305 | 17..321 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RC | 1744 | CG9441-RC | 174..1102 | 16..944 | 4645 | 100 | Plus |
Pu-RA | 1793 | CG9441-RA | 527..1151 | 320..944 | 3125 | 100 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..983 | 320..944 | 3125 | 100 | Plus |
Pu-RA | 1793 | CG9441-RA | 175..480 | 16..321 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179597 | 16..321 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 21179937..21180147 | 320..530 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 530..696 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181836..21181966 | 814..944 | 655 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 696..813 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:07:26 has no hits.
BS26165.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 10:14:20 Download gff for
BS26165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RC | 175..1095 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:35 Download gff for
BS26165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RC | 175..1095 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:57 Download gff for
BS26165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RC | 175..1095 | 17..937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:57 Download gff for
BS26165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179293..21179596 | 17..320 | 100 | -> | Plus |
2R | 21179938..21180147 | 321..530 | 100 | -> | Plus |
2R | 21181420..21181585 | 531..696 | 100 | -> | Plus |
2R | 21181645..21181761 | 697..813 | 100 | -> | Plus |
2R | 21181836..21181959 | 814..937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:35 Download gff for
BS26165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17066798..17067101 | 17..320 | 100 | -> | Plus |
arm_2R | 17067443..17067652 | 321..530 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 531..696 | 100 | -> | Plus |
arm_2R | 17069150..17069266 | 697..813 | 100 | -> | Plus |
arm_2R | 17069341..17069464 | 814..937 | 100 | | Plus |
BS26165.pep Sequence
Translation from 16 to 942
> BS26165.pep
MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL
ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS
DGHEKCTFHHDLELDHKPPTREALLPDMARSYRLLLGGLGENPDRQGLIK
TPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHDEMVVVKDIEMFSMCEH
HLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSRRLQVQERLTKQIAVAV
TQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGVFRDDPKTREE
FLNLVNSK*
BS26165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-PC | 308 | CG9441-PC | 1..308 | 1..308 | 1573 | 100 | Plus |
Pu-PA | 324 | CG9441-PA | 1..324 | 1..308 | 1546 | 95.1 | Plus |
Pu-PB | 273 | CG9441-PB | 18..273 | 58..308 | 1088 | 85.2 | Plus |