BS26166.complete Sequence
1064 bp assembled on 2011-08-24
GenBank Submission: KX803554
> BS26166.complete
GAAGTTATCAGTCGACATGGTCAAAGAGGTTAATATGTCGGGGACGCAAA
TGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGT
GCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCA
CGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGG
ACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACC
GCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACG
TTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGG
TGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGA
AGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGA
TAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTC
CAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAA
GCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGC
GATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACG
ATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGT
CCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTT
AGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCC
GGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGC
ACATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGTAAACTG
TCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGTGTGATCAAATTAATT
CGGAAAGCTTGTCGATTGGACCGTCAATTGATTCGGAAGGAACTATCACT
TTTCAAAATACAGAATCTGAGCCGATCGACGTCACCTCAATAGCCTGAAA
GCTTTCTAGACCAT
BS26166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RE | 1032 | CG6219-PE | 1..1032 | 17..1048 | 5160 | 100 | Plus |
| cav-RA | 1038 | CG6219-PA | 19..1038 | 29..1048 | 5100 | 100 | Plus |
| cav-RB | 1014 | CG6219-PB | 1..1014 | 35..1048 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RE | 1776 | CG6219-RE | 640..1671 | 17..1048 | 5160 | 100 | Plus |
| cav-RB | 1226 | CG6219-RB | 96..1121 | 23..1048 | 5115 | 99.9 | Plus |
| cav-RA | 1520 | CG6219-RA | 396..1415 | 29..1048 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24222535..24223423 | 160..1048 | 4445 | 100 | Plus |
| 3R | 32079331 | 3R | 24222337..24222474 | 23..160 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:33:39 has no hits.
BS26166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:31 Download gff for
BS26166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 601..1631 | 17..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:00 Download gff for
BS26166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 640..1670 | 17..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:03 Download gff for
BS26166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 640..1670 | 17..1047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:03 Download gff for
BS26166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24222337..24222474 | 23..160 | 99 | -> | Plus |
| 3R | 24222536..24223422 | 161..1047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:00 Download gff for
BS26166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20048059..20048196 | 23..160 | 99 | -> | Plus |
| arm_3R | 20048258..20049144 | 161..1047 | 100 | | Plus |
BS26166.pep Sequence
Translation from 16 to 1047
> BS26166.pep
MVKEVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKTRI
TEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVNKS
ERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQKK
KSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAPPG
VSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRMRT
GCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPETEM
NESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*
BS26166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-PE | 343 | CG6219-PE | 1..343 | 1..343 | 1786 | 100 | Plus |
| cav-PA | 345 | CG6219-PA | 7..345 | 5..343 | 1767 | 100 | Plus |
| cav-PB | 337 | CG6219-PB | 1..337 | 7..343 | 1757 | 100 | Plus |
| cav-PD | 337 | CG6219-PD | 1..337 | 7..343 | 1757 | 100 | Plus |
