BS26170.complete Sequence
1832 bp assembled on 2011-09-19
GenBank Submission: KX804817
> BS26170.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATTT
GGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACGAAACGC
TGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCTGAAAAA
TCCAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAAGAAGAG
ATCCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGCATTCTG
ATGATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAAAGCAGC
GACTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACACGGAAGA
CAGCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAAGACATTGCTA
AAAAGTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAACGTAGAG
TCGCTGAAAGTGGGAAGCCTGCATCTAATCACATACAAAGGTGGATCTCT
TGGACGGGAGGGCGCTCACGATGTTATCATTCCGGACGTGAACGTCAGCA
AGTGCCACTTAAAGTTTAAGTATGAGAACAAGTTGGGAATCTACCAATGT
CTTGATCTGGGCTCCCGAAACGGTACCATTCTCAATGGATCCCCAATGTC
CAGCGACGCCATGGATCTCGTTCACGGCAGTGTTATCACTCTGGGCCAAA
CAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTGCGGTTTGTGC
GAGCCGGGCCTTTTGATAGAGAATTCTCCGCCGGTAGTGGCCGCTGTTGC
CTCATCCACCGCATCCGTATTATCTCACAAGGAGCAGTTAAAAAAACTGC
AGCGCAAATATGGACTAGAAAACGAAAAATTCGTTGATACTAGCGGCAAT
GGGCAGTCCAACTACAATGATCGTGCCGCAACAAGGAGAGTCCAGGTGGG
CAGCAGTACAGATAAAGAAAAGACTGAGGTGGCTTGTGTGAACACTGAAA
TCGGTAGCTCTAATAAGGGTTTTAAAATGCTGAGTAAATTGGGCTGGCAA
AAGGGCGAAAAACTGGGCAAAACAAATGCCAGTGCTGGACTTTTGGAGCC
GATCAATGTGGTAGCCAATGAGGGCACTAGCGGTCTGGGAAACAGTGACC
CAGTGCTGTCCAGCTCCAGAACCATTGACAAACGGAAGCTGGCCAACTTG
AAGATCACTCAGGCGCGATATCAGCGCGCCAGTGATATGTTTGGACAATC
GGATGATAGTGATTAGAAGCTTTCTAGACCAT
BS26170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-RB | 1800 | CG8079-PB | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| CG8079-RA | 1806 | CG8079-PA | 1..1806 | 17..1816 | 8905 | 99.7 | Plus |
| CG8079-RC | 1506 | CG8079-PC | 630..1506 | 940..1816 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-RB | 2218 | CG8079-RB | 84..1885 | 17..1818 | 9010 | 100 | Plus |
| CG8079-RA | 2156 | CG8079-RA | 84..1891 | 17..1818 | 8915 | 99.7 | Plus |
| CG8079-RD | 2159 | CG8079-RD | 777..2038 | 557..1818 | 6310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15222495..15222982 | 940..1427 | 2440 | 100 | Plus |
| 2R | 25286936 | 2R | 15222041..15222425 | 557..941 | 1925 | 100 | Plus |
| 2R | 25286936 | 2R | 15218464..15218657 | 17..210 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 15223383..15223550 | 1651..1818 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 15221429..15221566 | 333..470 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 15218713..15218836 | 209..332 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 15223042..15223159 | 1428..1545 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 15223221..15223326 | 1546..1651 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 15221727..15221818 | 469..560 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:20:57 has no hits.
BS26170.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:28 Download gff for
BS26170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RB | 84..1883 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:42 Download gff for
BS26170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RB | 84..1883 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:24 Download gff for
BS26170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RB | 84..1883 | 17..1816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:24 Download gff for
BS26170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15222044..15222425 | 560..941 | 100 | -> | Plus |
| 2R | 15218464..15218655 | 17..208 | 100 | -> | Plus |
| 2R | 15218713..15218836 | 209..332 | 100 | -> | Plus |
| 2R | 15221429..15221565 | 333..469 | 100 | -> | Plus |
| 2R | 15221728..15221817 | 470..559 | 100 | -> | Plus |
| 2R | 15222497..15222982 | 942..1427 | 100 | -> | Plus |
| 2R | 15223042..15223159 | 1428..1545 | 100 | -> | Plus |
| 2R | 15223221..15223326 | 1546..1651 | 100 | -> | Plus |
| 2R | 15223384..15223548 | 1652..1816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:42 Download gff for
BS26170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11105969..11106160 | 17..208 | 100 | -> | Plus |
| arm_2R | 11106218..11106341 | 209..332 | 100 | -> | Plus |
| arm_2R | 11108934..11109070 | 333..469 | 100 | -> | Plus |
| arm_2R | 11109233..11109322 | 470..559 | 100 | -> | Plus |
| arm_2R | 11109549..11109930 | 560..941 | 100 | -> | Plus |
| arm_2R | 11110002..11110487 | 942..1427 | 100 | -> | Plus |
| arm_2R | 11110547..11110664 | 1428..1545 | 100 | -> | Plus |
| arm_2R | 11110726..11110831 | 1546..1651 | 100 | -> | Plus |
| arm_2R | 11110889..11111053 | 1652..1816 | 100 | | Plus |
BS26170.pep Sequence
Translation from 16 to 1815
> BS26170.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQANDAAKPESEDEDLEVQFD
ELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKKER
RHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSVPV
FKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGA
HDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDAMD
LVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTAS
VLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSSTDK
EKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINVVA
NEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDSD*
BS26170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-PB | 599 | CG8079-PB | 1..599 | 1..599 | 3092 | 100 | Plus |
| CG8079-PA | 601 | CG8079-PA | 1..601 | 1..599 | 3079 | 99.7 | Plus |
| CG8079-PC | 501 | CG8079-PC | 211..501 | 309..599 | 1490 | 100 | Plus |
| CG8079-PC | 501 | CG8079-PC | 1..181 | 1..181 | 965 | 100 | Plus |
| CG8079-PE | 229 | CG8079-PE | 1..181 | 1..181 | 965 | 100 | Plus |
| CG8079-PD | 250 | CG8079-PD | 1..181 | 1..181 | 965 | 100 | Plus |
