BS26171.complete Sequence
2552 bp assembled on 2011-09-19
GenBank Submission: KX803814
> BS26171.complete
GAAGTTATCAGTCGACATGCTACGGCTGTGGGCCTGCCTGCTCCTCCTGG
GATCAATCCAGATCCAGGCGGTTCCATTCTACGGCGATTCAAGTTCTGAA
GAGGTTGCCGAATTCGATGACTCCTCGGATTCCACACACGAGTCCTCAGA
TAACTCCAGCGGATACGACACCGAGTTCGTGCCACTGGAGCACCAGCAGC
AGCCGCAGGGACGCCAGGAGACGGCGGCCACCGTTCCCGCTCAAACCCCC
AGCGGTGTGGAGCAGAAGCCGTTCAATGTGGACACCATCACCACGGATGT
GAATTCCCCAAATCCGGCCATCTTCTTCCAGCAATCGTTCCCCTTCTTTG
GCAATGAGTTCTTCAATTCGTTCGGAGGCTTTGGCTTTGGAGCTGCCCAG
GAGCCCTGGTGGAAGGGACCCAATGTGTGCACCGAAAAGGAGGAAGACGA
GACTGTGGCCAGTGAAACGGAGGCAGAAGAAACCGTGGACACCTTTGGCC
AGGAACGTGATGGCGTTACCAACGTGGTGCGATCCCCACTCTTTGGCCAG
TTCCAGTTCAGCGTTAACTCCTGCGCCGAGAAGCCCAACAAGCACGTCTG
CACCAAGATCGTGAATCAAAATGGCAAGAAGAAAACGCTGACGCTGACCC
GCCAGTGCTGCTATGGATATGGACGCCCCAGAAACGCTGACTTCACAACG
CCCTGCGAGAAGATCGACATCAAGGACGTGGAGGCCACGGCCAGTGACAT
GGGTGCCAAGCAGTTCCTGGAGAGTGCACGCACCGCCGGTGAGCTGGCCG
ATATGCTCGGAGCAGGCAGTGGCAAGAAGGTGACCCTCTTCGTGCCCAAC
GACGCCGCCTTCATGGAGTACCGTGGTCATCATCAGCAGGAGAATAATGT
GGAAGATGCCAAGGCCGAGGCTTCCAAGCCATCCATCTACAAACTGCACG
CTGTTCTCGGCGAAGTTCAGCTGGAGGATGTGCCCAATGAGAAGCTTCTG
CAGACGGAGCTGCCTGACCAGAAGATCCGCATCAACAGCTACCAGCTGCC
TGCGGCTTTGGGCCTGGAACCCTACCGCTTTGCCGCCAACTGTGTGCCCA
TCGAGAAGCACGACAAGCTCTCGGAGCAGGCCCTTGTCCACACTCTGGGC
GGAGTCCTGAAGCCGCTGACCAAGAACCTTATGGATATCATCAGGGAGCG
TGCGGATATGTCCATTATGCGCACCGTTCTGGAGAAGACCAACCTGAGCG
CCATGCTAGAGGATGACAAGCCAGTGACCATCTTTGTGCCCACCGATGCC
GCCTTCGACAAGTTGGAACCTCATCTGCGTCGAGCCCTCAAGGAAGGTCG
CGGTTGTGCCTCCAACATCCTGAAGAACCATTTGCTGGACCTCACCTTCT
GCTCGCTGGCCACTGTTCCGGGTGCCAAGACGACGGCCTACAATCTACTG
GGAGAACCCCTGCTCCTCAACCGAACCCACCGCGCTGCGAATCAGACTGG
ACCGACTCCCATCTACATCAATAACTTGGCCAAAATCATTGATGCCGATA
TCATGGGCACCAATGGTGTGCTGCACGTAATCGACACCATCCTGCCCACC
GAATCGGCTCTGCCCATGACCTCGCTGATGTCGCAAAAGAACCTGACCAT
CTTCCAGCGATTGCTGGAGGCCTCCGGCTACGATGATCAGTTCGACGATC
TGGACAACGTGACCATCTTTGCACCAACTGACAAGGCTCTGCAGAATACG
GAATGGGCTCGCATGCTCAAGGAACAGCCGGAGCTGCTGAATCATAACTT
GGATCTGCTGGAGTTCCTTAACTACCATGTGGTCAAGCCCATGATCAAGA
CCTGTGACCTGTCGGAGAAGTCCCTGCCCACGGTTGCTGGATCTAGTGTG
CGTCTGAACCTGTACTCCACCCATGCTCTCTTCTCGGACGTGATGAACCG
GGCAACGGTAAACTGTGCCCGTTTGGTGCACTTCGATGACGAGAGCTGCG
GATCCGTTCTCCACCAGGTGGATCGTGCCTTGGCGCCTCCCAAGAATAAC
ATGCTTAAGCTGCTGGAGGCTAATCCCAACTACAGCAAGTTCCTGGAGCT
GGTTCGTAAGGCTAATCTTACACAGCTGCTGTCCAACGATTCGAGGAGTC
TCACCCTGCTGGTGCCAAAGAACGATATCTTCGAGGAGCTGAACGAGTCC
GGTGAGGGTTCAAAGCCCGCCGATCCCATGGCCTTGGTCAAAACCCATAT
CGTTGAGGATGTTGTCTGCTGTGCCGGCATTATCCCAACCAACTGGCCAT
TTGTCCGCTCCATCGAGTCCATCTCTGGCCAGCATCTGCGTATCACCCGC
GATCGTCGTCCCAAGATCGAGAACGCCGGCGTCACCAAGTGCGATGTGGT
GGCCACCAATGGAATTCTCCATGAGATCAACGACATCATCGTGCCACGCC
CACAGCGCCAGCAACAGCAGCGACCCCAGCTGATCCCGCCCGGAGCTGGC
TATCAGCCACAGGGCGATTTCGATGTCTTCTTCTGAAAGCTTTCTAGACC
AT
BS26171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RO | 2520 | CG3359-PO | 1..2520 | 17..2536 | 12600 | 100 | Plus |
| mfas-RE | 2520 | CG3359-PE | 1..2520 | 17..2536 | 12600 | 100 | Plus |
| mfas-RM | 2523 | CG3359-PM | 1..2523 | 17..2536 | 12535 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RO | 2764 | CG3359-RO | 106..2627 | 15..2536 | 12610 | 100 | Plus |
| mfas-RE | 2786 | CG3359-RE | 128..2649 | 15..2536 | 12610 | 100 | Plus |
| mfas-RM | 2789 | CG3359-RM | 128..2652 | 15..2536 | 12545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11985549..11986231 | 2047..1365 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 11984999..11985487 | 2536..2048 | 2445 | 100 | Minus |
| 3R | 32079331 | 3R | 11986304..11986772 | 1364..896 | 2345 | 100 | Minus |
| 3R | 32079331 | 3R | 11986835..11987120 | 895..610 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 11987185..11987377 | 609..417 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 11988658..11988799 | 417..276 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 11989210..11989328 | 275..157 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 11992742..11992814 | 87..15 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 11992072..11992143 | 159..88 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:05:53 has no hits.
BS26171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:24 Download gff for
BS26171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RO | 108..2626 | 17..2535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:25 Download gff for
BS26171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RE | 130..2648 | 17..2535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:49 Download gff for
BS26171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RE | 130..2648 | 17..2535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:49 Download gff for
BS26171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11985000..11985487 | 2048..2535 | 100 | <- | Minus |
| 3R | 11985549..11986231 | 1365..2047 | 100 | <- | Minus |
| 3R | 11986304..11986772 | 896..1364 | 100 | <- | Minus |
| 3R | 11986835..11987120 | 610..895 | 100 | <- | Minus |
| 3R | 11987185..11987376 | 418..609 | 100 | <- | Minus |
| 3R | 11988658..11988799 | 276..417 | 100 | <- | Minus |
| 3R | 11989210..11989325 | 160..275 | 100 | <- | Minus |
| 3R | 11992072..11992143 | 88..159 | 100 | <- | Minus |
| 3R | 11992742..11992812 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:25 Download gff for
BS26171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7814932..7815047 | 160..275 | 100 | <- | Minus |
| arm_3R | 7817794..7817865 | 88..159 | 100 | <- | Minus |
| arm_3R | 7818464..7818534 | 17..87 | 100 | | Minus |
| arm_3R | 7810722..7811209 | 2048..2535 | 100 | <- | Minus |
| arm_3R | 7811271..7811953 | 1365..2047 | 100 | <- | Minus |
| arm_3R | 7812026..7812494 | 896..1364 | 100 | <- | Minus |
| arm_3R | 7812557..7812842 | 610..895 | 100 | <- | Minus |
| arm_3R | 7812907..7813098 | 418..609 | 100 | <- | Minus |
| arm_3R | 7814380..7814521 | 276..417 | 100 | <- | Minus |
BS26171.pep Sequence
Translation from 16 to 2535
> BS26171.pep
MLRLWACLLLLGSIQIQAVPFYGDSSSEEVAEFDDSSDSTHESSDNSSGY
DTEFVPLEHQQQPQGRQETAATVPAQTPSGVEQKPFNVDTITTDVNSPNP
AIFFQQSFPFFGNEFFNSFGGFGFGAAQEPWWKGPNVCTEKEEDETVASE
TEAEETVDTFGQERDGVTNVVRSPLFGQFQFSVNSCAEKPNKHVCTKIVN
QNGKKKTLTLTRQCCYGYGRPRNADFTTPCEKIDIKDVEATASDMGAKQF
LESARTAGELADMLGAGSGKKVTLFVPNDAAFMEYRGHHQQENNVEDAKA
EASKPSIYKLHAVLGEVQLEDVPNEKLLQTELPDQKIRINSYQLPAALGL
EPYRFAANCVPIEKHDKLSEQALVHTLGGVLKPLTKNLMDIIRERADMSI
MRTVLEKTNLSAMLEDDKPVTIFVPTDAAFDKLEPHLRRALKEGRGCASN
ILKNHLLDLTFCSLATVPGAKTTAYNLLGEPLLLNRTHRAANQTGPTPIY
INNLAKIIDADIMGTNGVLHVIDTILPTESALPMTSLMSQKNLTIFQRLL
EASGYDDQFDDLDNVTIFAPTDKALQNTEWARMLKEQPELLNHNLDLLEF
LNYHVVKPMIKTCDLSEKSLPTVAGSSVRLNLYSTHALFSDVMNRATVNC
ARLVHFDDESCGSVLHQVDRALAPPKNNMLKLLEANPNYSKFLELVRKAN
LTQLLSNDSRSLTLLVPKNDIFEELNESGEGSKPADPMALVKTHIVEDVV
CCAGIIPTNWPFVRSIESISGQHLRITRDRRPKIENAGVTKCDVVATNGI
LHEINDIIVPRPQRQQQQRPQLIPPGAGYQPQGDFDVFF*
BS26171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-PO | 839 | CG3359-PO | 1..839 | 1..839 | 4374 | 100 | Plus |
| mfas-PE | 839 | CG3359-PE | 1..839 | 1..839 | 4374 | 100 | Plus |
| mfas-PM | 840 | CG3359-PM | 1..840 | 1..839 | 4362 | 99.9 | Plus |
| mfas-PG | 840 | CG3359-PG | 1..840 | 1..839 | 4362 | 99.9 | Plus |
| mfas-PF | 840 | CG3359-PF | 1..840 | 1..839 | 4362 | 99.9 | Plus |
