BS26172.complete Sequence
1457 bp assembled on 2011-08-24
GenBank Submission: KX803427
> BS26172.complete
GAAGTTATCAGTCGACATGTCACTGACCAAGTCGTCGTCGAGAAAGGATC
TAACCGAGCAGAATCAGTATCAGAATCAGAATGAGAATCAGAATCAGCCC
AAATCGACGACCATAGTCAAGTATGAGAAGTCGTCGTGCCTCTTCTGCAA
CGAATGGTTCGATGCCCAGACATTCACGGAACACCTGATCCACTGCGGCC
AGGTGCTGGAGGAGTGTCCCAACGGCTGTCAGGCCTTCATTCCACGCATC
CGTATGCGATCCCATCTGAAGGAGTGTCCACGCAACCAGCACAATCTGAG
CAATCAGCAACGCATGAGTGTCAGCATGGATCGCCTGGATAGGCAGTCGG
ATCAGCGTCTCCTGGTCATTGAACAGGACGTGGGCACCATTCGGTCCGTT
CTCAACGAGGAGATACGACAGCGTTTGCATCTCATTACCGATGTGGGCAA
CATACGGAAGCAGAACCAGGTCGTCGAGGACTGGACCCGCGAAACCGAGA
AGGCAATGGACGATCTGCGTCGCCAGATGGAGGAGGAAACCAATCGGAAG
GCATTCGCCATCGAACAGAACCAGCTGGATGTCCAGTACTGCTGTGATAT
CACACAGTCCTTGAAAGAGCAAGTGGAGTCCAGGCTGGATGAGGCCCAAA
AGCTGGTCAATCAGCTCTCGGCGGACGTGACCTATCACCAGAATCAGCTA
AACGACAATATCCTAAAGCTGGAGGAGCTGATCTTTGAGAACGAGCGGCT
CAACAGGGAGAAGTTCTTTCAGATCGAGGAGTTTCTGCAGCAGATCAATG
AGGACATCAAAACAAAGCTGGGCAACAGTGACTATGTGACGTCAAAGCAG
GCCACATTGGACTATGAGGTGAAGAATGTGAAGAACATTGTGTGCGAAAC
GGAGGAACGTTGCGATAAATTGGATCGAGCACTTCACCAGACCATGCAGA
ATATATCGGATTTGGAGACCCAAATGGCCATGCAGCAGCGGATTGCCAGT
GTCCAGAATATAAGGGGACACTTGATTTGGCGCATCAAGGATTACTCGAA
AAAACTGGAAGAGTCCAAGCAGTACGACACCATCCTCCATAGCGCCATGT
TCTCCAATAAAGCCTTTGGCTATGCTCTACGGCTGGATATATACTTGAAT
GGCAAGGGCACCTGGAAGGGCAGGAACATGATCGCCTGCTTGAACGTTCT
ATCCGGAGAGTACGATCCCCTTCTGGCCTGGCCATGCCGCCTTCAGGCCG
AGATCATCATCCGGGATCAGTGCACGAATGTGGCAGATGCCGAGGATTAT
GTGAAGACCATCTTTGTGCGCAAGAAGAGCGATGATTTTATCCAAAGCAA
CCAGTACTTCCATATACCACACAAGGTAATCACCAGTCGCAACTATCTTC
GCAACGATTCCATGTTCATCGAGGTTCGAGTTCTAAAATAAAAGCTTTCT
AGACCAT
BS26172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf-like-RA | 1425 | CG4394-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
| Traf-like-RC | 1359 | CG4394-PC | 96..1359 | 178..1441 | 6320 | 100 | Plus |
| Traf-like-RE | 1188 | CG4394-PE | 1..1188 | 254..1441 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf-like-RA | 2285 | CG4394-RA | 379..1805 | 17..1443 | 7135 | 100 | Plus |
| Traf-like-RE | 2275 | CG4394-RE | 530..1795 | 178..1443 | 6330 | 100 | Plus |
| Traf-like-RD | 1877 | CG4394-RD | 132..1397 | 178..1443 | 6330 | 100 | Plus |
| Traf-like-RE | 2275 | CG4394-RE | 379..482 | 17..120 | 520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16415656..16416085 | 178..607 | 2150 | 100 | Plus |
| X | 23542271 | X | 16416153..16416564 | 606..1017 | 2060 | 100 | Plus |
| X | 23542271 | X | 16416794..16417105 | 1132..1443 | 1560 | 100 | Plus |
| X | 23542271 | X | 16415424..16415586 | 17..179 | 815 | 100 | Plus |
| X | 23542271 | X | 16416618..16416734 | 1016..1132 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8767..8857 | 716..806 | 113 | 58.2 | Plus |
BS26172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:30 Download gff for
BS26172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf-like-RA | 339..1761 | 17..1439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:44 Download gff for
BS26172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf-like-RA | 379..1801 | 17..1439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:46 Download gff for
BS26172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf-like-RA | 379..1801 | 17..1439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:46 Download gff for
BS26172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16415424..16415585 | 17..178 | 100 | -> | Plus |
| X | 16415657..16416085 | 179..607 | 100 | -> | Plus |
| X | 16416155..16416563 | 608..1016 | 100 | -> | Plus |
| X | 16416619..16416734 | 1017..1132 | 100 | -> | Plus |
| X | 16416795..16417101 | 1133..1439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:44 Download gff for
BS26172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16310652..16310767 | 1017..1132 | 100 | -> | Plus |
| arm_X | 16310188..16310596 | 608..1016 | 100 | -> | Plus |
| arm_X | 16309457..16309618 | 17..178 | 100 | -> | Plus |
| arm_X | 16309690..16310118 | 179..607 | 100 | -> | Plus |
| arm_X | 16310828..16311134 | 1133..1439 | 100 | | Plus |
BS26172.pep Sequence
Translation from 16 to 1440
> BS26172.pep
MSLTKSSSRKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDA
QTFTEHLIHCGQVLEECPNGCQAFIPRIRMRSHLKECPRNQHNLSNQQRM
SVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRKQN
QVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLK
EQVESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKF
FQIEEFLQQINEDIKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEERCD
KLDRALHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEES
KQYDTILHSAMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYD
PLLAWPCRLQAEIIIRDQCTNVADAEDYVKTIFVRKKSDDFIQSNQYFHI
PHKVITSRNYLRNDSMFIEVRVLK*
BS26172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf-like-PA | 474 | CG4394-PA | 1..474 | 1..474 | 2470 | 100 | Plus |
| Traf-like-PC | 452 | CG4394-PC | 33..452 | 55..474 | 2182 | 100 | Plus |
| Traf-like-PE | 395 | CG4394-PE | 1..395 | 80..474 | 2038 | 100 | Plus |
| Traf-like-PD | 395 | CG4394-PD | 1..395 | 80..474 | 2038 | 100 | Plus |
| Traf-like-PG | 395 | CG4394-PG | 1..395 | 80..474 | 2038 | 100 | Plus |
