BS26174.complete Sequence
1067 bp assembled on 2011-08-26
GenBank Submission: KX802333
> BS26174.complete
GAAGTTATCAGTCGACATGGATTTCAATTTTGATACTGTGACTCCCTGTT
CGACCATGTCGTCCTACTATAACTTTAAGATGGCGAGTGGTGGGCGTGGA
TTTGGGATGTCCCATTCTCTGCCATCCGGAATGGATACAGAATTTTCATT
TCCAAGTTCATCGTCGCGTCGTGGTTACAATGATTTCCCCGGCTGCGGCG
GCAGCGGCGGAAATGGTGGGAGTGCCAACAATTTAGGGGGCGGCAACATG
TGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGG
ATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATGAACGATCCTCGGG
CAAGCAACACCAACCTGATTGTCAACTACTTGCCCCAGGACATGACCGAT
CGCGAGCTGTACGCCCTATTCAGAGCCATTGGACCCATCAACACGTGCAG
AATCATGCGAGACTATAAGACTGGCTACAGTTTTGGTTATGCTTTCGTGG
ACTTCACATCGGAAATGGACTCGCAGCGTGCTATTAAAGTGCTGAATGGC
ATCACAGTGCGCAACAAGCGGCTTAAGGTTTCCTATGCACGTCCCGGCGG
AGAATCGATCAAGGACACCAATCTGTATGTGACCAATCTGCCGCGTACCA
TAACCGACGATCAGCTGGACACGATCTTCGGCAAGTACGGTTCCATTGTG
CAGAAGAACATCTTGCGTGACAAGCTCACAGGTCGTCCTCGTGGTGTGGC
CTTTGTTCGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGC
TGAACAACGTAATACCCGAGGGCGGATCACAGCCGCTGTCCGTCCGGTTG
GCTGAGGAGCATGGCAAGGCGAAGGCGGCCCACTTTATGTCGCAGATGGG
CGTGGTTCCAGCAAATGTACCACCGCCGCCACCACAACCGCCAGCACATA
TGGCCGCCGCATTCAACATGATGCACAGAGGTAGATCAATTAAATCACAG
CAACGCTTCCAAAACTCGCATCCCTATTTCGATGCTAAAAAGTTTATCTG
AAAGCTTTCTAGACCAT
BS26174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RC | 1035 | CG43770-PC | 1..1035 | 17..1051 | 5175 | 100 | Plus |
| Sxl-RN | 1035 | CG43770-PN | 1..1035 | 17..1051 | 5175 | 100 | Plus |
| Sxl-RJ | 1041 | CG43770-PJ | 74..1041 | 84..1051 | 4840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RC | 1515 | CG43770-RC | 117..1153 | 17..1053 | 5185 | 100 | Plus |
| Sxl-RN | 2758 | CG43770-RN | 117..1153 | 17..1053 | 5185 | 100 | Plus |
| Sxl-RJ | 1886 | CG43770-RJ | 555..1524 | 84..1053 | 4850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7085619..7085955 | 469..133 | 1685 | 100 | Minus |
| X | 23542271 | X | 7084526..7084820 | 1053..759 | 1475 | 100 | Minus |
| X | 23542271 | X | 7085156..7085341 | 761..576 | 930 | 100 | Minus |
| X | 23542271 | X | 7085408..7085519 | 579..468 | 560 | 100 | Minus |
| X | 23542271 | X | 7092697..7092767 | 87..17 | 355 | 100 | Minus |
| X | 23542271 | X | 7087613..7087661 | 134..86 | 245 | 100 | Minus |
| X | 23542271 | X | 1371663..1371769 | 358..464 | 205 | 79.4 | Plus |
| X | 23542271 | X | 1372462..1372598 | 761..897 | 205 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-26 22:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 224..185 | 110 | 75 | Minus |
BS26174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 10:14:22 Download gff for
BS26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RC | 111..1144 | 17..1050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:49 Download gff for
BS26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RN | 117..1150 | 17..1050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:00 Download gff for
BS26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RN | 117..1150 | 17..1050 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:00 Download gff for
BS26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7084529..7084819 | 760..1050 | 100 | <- | Minus |
| X | 7085158..7085339 | 578..759 | 100 | <- | Minus |
| X | 7085410..7085517 | 470..577 | 100 | <- | Minus |
| X | 7085619..7085954 | 134..469 | 100 | <- | Minus |
| X | 7087614..7087659 | 88..133 | 100 | <- | Minus |
| X | 7092697..7092767 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:49 Download gff for
BS26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6978562..6978852 | 760..1050 | 100 | <- | Minus |
| arm_X | 6979191..6979372 | 578..759 | 100 | <- | Minus |
| arm_X | 6979443..6979550 | 470..577 | 100 | <- | Minus |
| arm_X | 6979652..6979987 | 134..469 | 100 | <- | Minus |
| arm_X | 6981647..6981692 | 88..133 | 100 | <- | Minus |
| arm_X | 6986730..6986800 | 17..87 | 100 | | Minus |
BS26174.pep Sequence
Translation from 16 to 1050
> BS26174.pep
MDFNFDTVTPCSTMSSYYNFKMASGGRGFGMSHSLPSGMDTEFSFPSSSS
RRGYNDFPGCGGSGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGS
GGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY
KTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKD
TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN
KREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPAN
VPPPPPQPPAHMAAAFNMMHRGRSIKSQQRFQNSHPYFDAKKFI*
BS26174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-PC | 344 | CG43770-PC | 1..344 | 1..344 | 1823 | 100 | Plus |
| Sxl-PN | 344 | CG43770-PN | 1..344 | 1..344 | 1823 | 100 | Plus |
| Sxl-PR | 342 | CG43770-PR | 1..324 | 1..324 | 1708 | 99.4 | Plus |
| Sxl-PJ | 346 | CG43770-PJ | 21..346 | 18..344 | 1700 | 99.1 | Plus |
| Sxl-PG | 346 | CG43770-PG | 21..346 | 18..344 | 1700 | 99.1 | Plus |
