BS26179.complete Sequence
2789 bp assembled on 2011-09-19
GenBank Submission: KX805516
> BS26179.complete
GAAGTTATCAGTCGACATGAGCGTAGATATAGCCAGCACGATCAAGTTCC
GGGATATTTGCAGCCTGTTCGAGAAGATTAAGGCCACGCAAAAGGTGGCT
AACAAGGAGGAGGTCCTCAAGAGCTACTACGAGTCCTTCTGTCGCCACCG
CGAATCCTTTCGCCGGCAAACCGGATTAAACAACGACCAGCCGGAGGACG
GTGCCAGTAGCTTCTATTCCGTGCTGCGACTGCTGCTTCCGGGTGCGGAC
ACTGGTCGGGATACCTATGGATTGCAGATCACCGCGCTGGGCAGGCTCTA
CATCAGGGTGCTCCAGCTACCCACGGACTCCAGCGATGCCATCAGGCTGC
AGCACCGCAACGGAAACATGTACCGGGACTACGGTGATGTTGTTTATTCC
GTGCTTAAGCCAAGGTGCTTTAATCCGCCCAGCAATTTGAGACTGAAAGA
AATCCATCAGATGCTGGACACCATTGCCAACGAGGACACAGAAGTTAAGC
AGCAGCAACTCATCCGGTTTACGGAGCAGGCCTCGCCTGAGGAACAGAAG
TGGCTAATTCGGTTGCTGCTTAAGAGCCTCGGGCTGGGGATCGGTGAGCA
AAAGATTTTCGGTGTGCTGCACCCCAAGGCGCAGGATATCTACCAGCGCT
GCTCCGATCTGGGACATGTGTGCAATCTGCTGGCAGACCGAACCACCGAC
CTAGACGCCAGCAGCAGCAAGGACAGCAAGGCGGCGGTCAAGTTTGTAAA
CCTGAATTCCGTCATACGGCCATTCCACCAGATACGTCCCATGCTGTGCG
AACGATTCCCCGGTGACATCCAGGAGCTGATGCAGTCGGATGTGCTCTAT
CTGGAGACCAAAATGGATGGCGAACGCTTTCAGCTGCACATCGATCGGGG
TCGTTTCATGTACATTTCCCGCAATGGAGTGGACTACACCAGAAACTTTG
GTCACAGCTACGATCACGGCACCTTAACGCCAAAGCTGAGGGGACTTCTG
CCGCTGGGTCTGGAGTCTATCATACTCGACGGCGAGATGATGGTGTGGGA
TACCAACAAACTGCGCTTTCGGGAAAAAGGCGAGAATACGGACGTGAAGA
GCCTGAAGCCGGAGGGCAGCTGGCAGCCATGTTTCGTGGTGTACGATCTG
CTATATTTTAATGGCCAGAGTCTGCTGGACCATACCTACATTCAGCGGGC
GTACAAATTGCAGAAACTCATAGTTGAACAGTCGGGTGTGCTGCAGTTGA
TGCGTGCACGCAAAATCGGTTCCGTTCAAGAGTTCAACGAGCTGTTCCAG
CAGGCACTCGACTCCCACGCCGAGGGCATTGTGCTAAAGAAGCAGGGATC
AAGATATCAGCCTGGCGTTAGACTGGGCGGTGGGTGGTACAAGGACAAGG
CTGATTACATCAAAGGGCTGATCACCGAGTTCGATGTGCTGATCATCGGG
GCATTCTACAATCGCAAGCGCACCTTTGTGGACTCATTTTTACTGGGCGT
TCTCCAGCCGGCGCCGCCAGGCAGCTCTAATCGTCCCGAAGTCTTCAGTA
TTGGAGTGGTTGCCAACAATACGAAACAGCGCGGAGTGCTAAATCACACA
CTGAAACCACATTGGCATGATGTAGTCAATGAGCCACCGCCATTGTGGTT
TCACTACAAGCCCAAGGAGAGGTCCGGATGCCCCGATCTGTGGATTGAAC
CGCAGAACTCGGTAATTTTGCAGGTGAAAGCTGCTGATCTGGCGCCCAAT
GGAGCATTTTTCACCCGAAAATCGTTGCACTTTCCGCGCACTGAGATGAA
ACGGGATGATAAGACCTGGAGCGAGTGTATGACACTTAAGGAGTTTAACG
ATCTCTGCGGAGGTCCTTTGGCCATCAAGAAGTTAAACAAGCGGCAACTG
CGACTAGAGGATGTGACCACCAAGCGGAAACAGATGCGTATGACGCCCTC
GGAGCGAAGCCGACTGGGATTGGCCGTCTATGAGAAGCGCTATGACGCTA
GCACCTCCGCTAGCACTTCCAAACTTTTCGACGGTCTGAGCTTTTGCATT
CTGAGCGGATCTGCCGGACGACACAGCAAGCATCAGCTGCAGGAGCTGGC
TGTTAAAAACGGTGGCTGCATCGTGGAAAATCCCCTGCCCAATGATCCAA
AGTGTTTTTGCATCGCAGGCGATGAGACGTTTTTAGTTAAGCGGCTCATC
CTTCAACAGCCACGCACCTGTGACATTGTGCGCATGGAGTGGCTACTTAG
GGTCTGTCAGAAGCAGGAGCTTGAACTAAAGCCTAGAGATCTTATTGCGG
CCACTGAACCACTGCAGCAGGATCTGGCTGAATGTTTTGATCGGCACGGT
GATAGCTACACCAAAGACATTGCCAACGTGGAGGAGCTGCAGGATCTGCT
TCAAGGCATTGAGTTGACAGCTGATAATGTGGCTGGCATAACCGCATCTA
ATCTCAATGCTCTGGAGGATCAGCTTCTGGATGGGAAAAAGAATCTGAAC
ATGTTCCGCAACCTTAATGCGTTCTTCTACAGTCCGCATGGTGATGAAGT
GGCTAAGCTTCTGTTTCTTCAAAACGGCGGCCGGATAGTCGACGATTCCG
ATCCGCAACTAAATCTGGGATTTATCTGTATGTCTTCTGACATCGATAAC
GACCACTTCGAGCACTGGCTGCACAATCATTCCAAGTTGACCACTGACAA
GGTCTTAAACTCGGCGTGGATACATCAGTGCCATCGCGAAGGCATCCTAC
TTCCTATGCATTCTTTCGTCTAAAAGCTTTCTAGACCAT
BS26179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lig4-RA | 2757 | CG12176-PA | 1..2757 | 17..2773 | 13785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lig4-RA | 3040 | CG12176-RA | 72..2828 | 17..2773 | 13785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13664796..13666163 | 2773..1406 | 6840 | 100 | Minus |
| X | 23542271 | X | 13666226..13667138 | 1405..493 | 4565 | 100 | Minus |
| X | 23542271 | X | 13667428..13667740 | 329..17 | 1565 | 100 | Minus |
| X | 23542271 | X | 13667196..13667360 | 494..330 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:12:00 has no hits.
BS26179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:27 Download gff for
BS26179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lig4-RA | 69..2823 | 17..2771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:11 Download gff for
BS26179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lig4-RA | 72..2826 | 17..2771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:03 Download gff for
BS26179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lig4-RA | 72..2826 | 17..2771 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:03 Download gff for
BS26179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13664798..13666163 | 1406..2771 | 100 | <- | Minus |
| X | 13666226..13667136 | 495..1405 | 100 | <- | Minus |
| X | 13667196..13667360 | 330..494 | 100 | <- | Minus |
| X | 13667428..13667740 | 17..329 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:11 Download gff for
BS26179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13558831..13560196 | 1406..2771 | 100 | <- | Minus |
| arm_X | 13560259..13561169 | 495..1405 | 100 | <- | Minus |
| arm_X | 13561229..13561393 | 330..494 | 100 | <- | Minus |
| arm_X | 13561461..13561773 | 17..329 | 100 | | Minus |
BS26179.pep Sequence
Translation from 16 to 2772
> BS26179.pep
MSVDIASTIKFRDICSLFEKIKATQKVANKEEVLKSYYESFCRHRESFRR
QTGLNNDQPEDGASSFYSVLRLLLPGADTGRDTYGLQITALGRLYIRVLQ
LPTDSSDAIRLQHRNGNMYRDYGDVVYSVLKPRCFNPPSNLRLKEIHQML
DTIANEDTEVKQQQLIRFTEQASPEEQKWLIRLLLKSLGLGIGEQKIFGV
LHPKAQDIYQRCSDLGHVCNLLADRTTDLDASSSKDSKAAVKFVNLNSVI
RPFHQIRPMLCERFPGDIQELMQSDVLYLETKMDGERFQLHIDRGRFMYI
SRNGVDYTRNFGHSYDHGTLTPKLRGLLPLGLESIILDGEMMVWDTNKLR
FREKGENTDVKSLKPEGSWQPCFVVYDLLYFNGQSLLDHTYIQRAYKLQK
LIVEQSGVLQLMRARKIGSVQEFNELFQQALDSHAEGIVLKKQGSRYQPG
VRLGGGWYKDKADYIKGLITEFDVLIIGAFYNRKRTFVDSFLLGVLQPAP
PGSSNRPEVFSIGVVANNTKQRGVLNHTLKPHWHDVVNEPPPLWFHYKPK
ERSGCPDLWIEPQNSVILQVKAADLAPNGAFFTRKSLHFPRTEMKRDDKT
WSECMTLKEFNDLCGGPLAIKKLNKRQLRLEDVTTKRKQMRMTPSERSRL
GLAVYEKRYDASTSASTSKLFDGLSFCILSGSAGRHSKHQLQELAVKNGG
CIVENPLPNDPKCFCIAGDETFLVKRLILQQPRTCDIVRMEWLLRVCQKQ
ELELKPRDLIAATEPLQQDLAECFDRHGDSYTKDIANVEELQDLLQGIEL
TADNVAGITASNLNALEDQLLDGKKNLNMFRNLNAFFYSPHGDEVAKLLF
LQNGGRIVDDSDPQLNLGFICMSSDIDNDHFEHWLHNHSKLTTDKVLNSA
WIHQCHREGILLPMHSFV*
BS26179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lig4-PA | 918 | CG12176-PA | 1..918 | 1..918 | 4840 | 100 | Plus |
| DNA-ligI-PA | 747 | CG5602-PA | 224..709 | 128..599 | 256 | 23.4 | Plus |
| lig3-PA | 806 | CG17227-PA | 77..642 | 70..646 | 251 | 23.8 | Plus |
