BS26182.complete Sequence
2387 bp assembled on 2011-09-19
GenBank Submission: KX806419
> BS26182.complete
GAAGTTATCAGTCGACATGTTGGCAATGAAGGATAAGCCTTGGCTGCTGC
TATTTGGCCTATTGGCCGCATTAAGCTGCCTAGCCAGCTTTGGAGATGCC
GCCTACCCCTATTATGGCACCAAGATCGGAGCCCTGACCCGCCTGCACCA
CGGTGTCTCCGGCGATGTGTACGCCGTCGATTCCCGCACCATCTTCATCA
AGAAGTTCAATTACGACGGCGAGGCGCCAGCTGCCTACTTCTATGTGGGG
AATACTGCACGGCCAAGTAATGAAGGTGCCGCCCGGCTGAGGGACGAAAG
GGGCGGGACCGCCTCCCTGACCCGCCGTTACAGGAACAAGGACGTCACAC
TGTCGCTGCCCGAGGGCAAAACACTGCGCGACATCAAATGGTTCTCGGTG
TGGTGCGATGAGTTCGCGGTGAATTTCGGTGACGTTTCCATTCCGCCCAA
CTTGGACTTCCCGCGGCCACAGAAGATCAGCGCTCTGAGGGGCGTCCATG
GTGTCTCCTCCGACAACATTGTCATCGTGGACGCCCAAACGCTGCTGGTG
CCCAACTTTAGCTACGACGGAGAGGCGCCCGATGCCAAATTCTGGGTGGG
TCGTGGCCAGCGGCCCACTTCCGACGGCCTGAGGATTCCGGACGAGAATG
GCAAGGAGAACCCGCTGCGTCGCTACGAGCGCAAGACAATCGTGCTGACC
CTGCCCGAGGACCTGACCATCTTCGACATTGGTCACTTTGGCGTTTGGTG
CGAGGCCTTCACCGTGGATTTTGGCCACGTTCGCCTGCCGGAGGGCCTGA
ATGTGCCGCCCTCCCTGAAGATGCTCGGAATCAGTCCTCAGTCGAAGCTC
AACTGCGAGGTGCTCTACGACGATCTGGCATTCGAGGTTCGCTGGGCGGT
GGCCGGCGAGAGCATCGTGGTCCAATTGGTGGCCAAATTGGAACCGAACC
ACTACATGTCCTTCGGAATTTCGCCAAATAAGAACATTAGCCAGATGATT
GGTGCGGATGCAGTGGTGGCCTGGGTGGATCCCCAGACCGGAAACGGATT
TGCAACGGACTACTTCCTGGAGGGGAAGGCTCAGTGCTCTGGTGGGCGTG
GCGCTTGTCCGGACACCAAGATCTCTGAGAAGACCAACTCCATAAGGCTA
CTTAACGCTGCCATGGTAAATGGCTATTCAATTGTGACCTACCAAAGATC
CCTAGCTGCCACGGATCGCCTGGATCTGCCAATCTCGATTACGGGAGCGG
AATCAGTGGTGTGGGCAATTGGACCACTTAACGATTACCAGGAGGTCTCC
TTCCATACATTCTACAACAAGCATCTGCACCAGATTGAGTTCGGTCGCCA
GCCCAAGTGGAATTGTCCCTTGCCAGAGGGTGCTCGTGGCAATAGCAACT
CATCGGAACAGGAGGACTCTGCTCCCGCGGCCCAGAGCTCTACTGGCGGA
GCTGGTTATCCGCCAGCAGGCCGACCCAACGTGGAACCCGATGAGGAGTT
CTACGAGAATCGTGCGGAGGCTCTGCATCGTCAGCCACCGCAGAGGCGCC
AGGAAACAGCGATCATCACCCAAAGGCGTCCAGTGCCCACTCCAAAGCCA
GTGAACAGCAATGGCGCCTGGGACATCCCTGCCATTCAGTGTCACGAACC
AGAGGACGGAGTGTTCTATGCCCAGATGGGTCCCACGGGAGGAAAACACG
GCTATCCAGCAATCACAGGACACGTCGGATGGGGAATTTCCTGGTACATC
AACGGACTTCTGATCCCCGAGATTCATGTAGTGCGAGGCAAGACCTATAC
ATTTGTAGTGGAGGGTGGAAACAATCCGGATATTCCGGCCAAGTACCATC
CGTTCTACATCAGTGACGATCCTGTGGGAGGATACGAGCACAAACGCGAG
GAAGAGAAAAAGGCCGTGCGCATCTACGCCGGAGTACATCGCTCCCGGTC
CGGCCAAGTCACGCCCACCGGCGTTGGCCGTCTCTGCAACTGGACACCAG
ATGTGGAAGGTCCACCGGCGGACGACTACCAGTCCTTCGGCGCCTACCAG
CGCACCCTGACCCTCAAGTGCGACGCCGGCGAGCCGGGAGTGATTACCTG
GAAGCCGGACCGGAATACGCCGGACACGGTGTACTACCATTGCTTCACAC
ACCGCTATCTGGGATGGAAGATCCACGTGCACGACTCATGTGACTCGGAA
GCGGGTGGACTCAAAGGAGCCGCCTCCGAACGCCACGAAATCCGGCTGCC
GGCGAAAGCCACCGTCGCGGAACCGGCGCCAGTGCACGAGGACTACGCCG
GAGAGGCGTCCGTACGGCACGAAACCAAGATGGCATCCGCGCTGCTGAGG
CTCTCGAGGAGAGCCTACTGAAAGCTTTCTAGACCAT
BS26182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skeletor-RC | 2355 | CG43161-PC | 1..2355 | 17..2371 | 11760 | 100 | Plus |
| Skeletor-RE | 4512 | CG43161-PE | 1..2313 | 17..2329 | 11550 | 100 | Plus |
| Skeletor-RB | 870 | CG43161-PB | 1..825 | 17..841 | 4110 | 99.9 | Plus |
| Skeletor-RE | 4512 | CG43161-PE | 2442..2485 | 2328..2371 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skeletor-RC | 4905 | CG43161-RC | 299..2654 | 16..2371 | 11765 | 100 | Plus |
| Skeletor-RE | 5035 | CG43161-RE | 299..2612 | 16..2329 | 11555 | 100 | Plus |
| Skeletor-RD | 5035 | CG43161-RD | 299..2612 | 16..2329 | 11555 | 100 | Plus |
| Skeletor-RE | 5035 | CG43161-RE | 2741..2784 | 2328..2371 | 220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10692345..10693123 | 941..1719 | 3895 | 100 | Plus |
| 3R | 32079331 | 3R | 10689261..10689762 | 78..579 | 2510 | 100 | Plus |
| 3R | 32079331 | 3R | 10693429..10693847 | 1911..2329 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 10690242..10690502 | 581..841 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 10693179..10693375 | 1717..1913 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 10691347..10691449 | 839..941 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 10687241..10687303 | 16..78 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 10693976..10694019 | 2328..2371 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:09:47 has no hits.
BS26182.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:25 Download gff for
BS26182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RA | 305..2653 | 22..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:58 Download gff for
BS26182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RC | 305..2653 | 22..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:14 Download gff for
BS26182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RC | 305..2653 | 22..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:14 Download gff for
BS26182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10693978..10694018 | 2330..2370 | 100 | | Plus |
| 3R | 10693181..10693374 | 1719..1912 | 100 | -> | Plus |
| 3R | 10693431..10693847 | 1913..2329 | 100 | -> | Plus |
| 3R | 10687247..10687302 | 22..77 | 100 | -> | Plus |
| 3R | 10689261..10689764 | 78..581 | 99 | -> | Plus |
| 3R | 10690243..10690502 | 582..841 | 100 | -> | Plus |
| 3R | 10691350..10691449 | 842..941 | 100 | -> | Plus |
| 3R | 10692346..10693122 | 942..1718 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:58 Download gff for
BS26182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6512969..6513024 | 22..77 | 100 | -> | Plus |
| arm_3R | 6514983..6515486 | 78..581 | 99 | -> | Plus |
| arm_3R | 6515965..6516224 | 582..841 | 100 | -> | Plus |
| arm_3R | 6517072..6517171 | 842..941 | 100 | -> | Plus |
| arm_3R | 6518068..6518844 | 942..1718 | 100 | -> | Plus |
| arm_3R | 6518903..6519096 | 1719..1912 | 100 | -> | Plus |
| arm_3R | 6519153..6519569 | 1913..2329 | 100 | -> | Plus |
| arm_3R | 6519700..6519740 | 2330..2370 | 100 | | Plus |
BS26182.pep Sequence
Translation from 16 to 2370
> BS26182.pep
MLAMKDKPWLLLFGLLAALSCLASFGDAAYPYYGTKIGALTRLHHGVSGD
VYAVDSRTIFIKKFNYDGEAPAAYFYVGNTARPSNEGAARLRDERGGTAS
LTRRYRNKDVTLSLPEGKTLRDIKWFSVWCDEFAVNFGDVSIPPNLDFPR
PQKISALRGVHGVSSDNIVIVDAQTLLVPNFSYDGEAPDAKFWVGRGQRP
TSDGLRIPDENGKENPLRRYERKTIVLTLPEDLTIFDIGHFGVWCEAFTV
DFGHVRLPEGLNVPPSLKMLGISPQSKLNCEVLYDDLAFEVRWAVAGESI
VVQLVAKLEPNHYMSFGISPNKNISQMIGADAVVAWVDPQTGNGFATDYF
LEGKAQCSGGRGACPDTKISEKTNSIRLLNAAMVNGYSIVTYQRSLAATD
RLDLPISITGAESVVWAIGPLNDYQEVSFHTFYNKHLHQIEFGRQPKWNC
PLPEGARGNSNSSEQEDSAPAAQSSTGGAGYPPAGRPNVEPDEEFYENRA
EALHRQPPQRRQETAIITQRRPVPTPKPVNSNGAWDIPAIQCHEPEDGVF
YAQMGPTGGKHGYPAITGHVGWGISWYINGLLIPEIHVVRGKTYTFVVEG
GNNPDIPAKYHPFYISDDPVGGYEHKREEEKKAVRIYAGVHRSRSGQVTP
TGVGRLCNWTPDVEGPPADDYQSFGAYQRTLTLKCDAGEPGVITWKPDRN
TPDTVYYHCFTHRYLGWKIHVHDSCDSEAGGLKGAASERHEIRLPAKATV
AEPAPVHEDYAGEASVRHETKMASALLRLSRRAY*
BS26182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skeletor-PC | 784 | CG14681-PB | 1..784 | 1..784 | 4230 | 100 | Plus |
| Skeletor-PE | 1503 | CG43161-PE | 1..774 | 1..774 | 4174 | 99.6 | Plus |
| Skeletor-PB | 289 | CG14681-PA | 1..287 | 1..287 | 1476 | 96.9 | Plus |
| CG34355-PF | 748 | CG34355-PF | 65..488 | 15..431 | 830 | 40.3 | Plus |
| CG34355-PB | 748 | CG34355-PB | 65..488 | 15..431 | 830 | 40.3 | Plus |
| CG34355-PF | 748 | CG34355-PF | 538..718 | 550..733 | 497 | 50.5 | Plus |
