BS26232.complete Sequence
1477 bp assembled on 2011-08-24
GenBank Submission: KX801486
> BS26232.complete
GAAGTTATCAGTCGACATGACCCAGATCCCCGAGAGCTGTTATAAGATGT
GGGGTGGTAGGTTCACCGAGGGGCCGCATGAGGCTCTCCATTCGCTGAAT
AACAGCCTGCCCTACGATTCTCGCCTCTATGCGGATGATTTGGACGCCAG
CAAGGCGTATGCAGAGGCACTCCATCGAGCTGGTCTCATCAACTCAGCCG
AGGCGGATAAGTTGGTAAAGAATCTGGAGCTGTTGCGATTCGATTGGATC
GAGGGAACTGTGAAGATTCTACCCGGTGACGAGGATGTGCACACGGTGAA
CGAGCGATTGCTGGTGGAGATTACCGGCGAACTGGGCCAGCGGCTTCACA
CGGGCAGAAGCAGAAATGACCAGGTGGTCACGGACATGAAGCTATGGCTT
CGCAAGGCCATTCGTGAGACCTTGGGCCGGCTGAGTGGCATCATTGAAAC
TGCCACCAGGCAGGCGGAACTCCACCTGGGCGTCCTCATGCCAGGATACA
CGCATCTGCAGCGGGCCCAGACCGTTCAGTTCTCCCACTGGCTGCTCTCG
CACGCGTTTGCATTAAGGGAAGATGGCCAGCGGCTGTTGGAGCTAAGGGA
TCGGGCGAATGTCCTGCCCCTTGGAAGTGGCGCTCTGGCGGGAAATCCCC
TTGGCATCGATCGTTTGTGGCTGGCCGAGAGGCTGGGATTCTCGGGTGTC
ACAGCCAACAGCATGCACGCCGTGGGAGATCGAGATTTTGTAGTTGACTT
CATCTACTGCTGCTCTATGGTGAGCTTGCATCTGTCCCGATTGGCGGAGG
ATTTGATCATCTACAGTACCAAGGAGTTCGACTTCATCAAACTGGCCGAT
GGCTTTTCCAGTGGCAGCAGCCTGATGCCTCAGAAAAGGAATCCGGACAG
CTTGGAGCTGATTCGCGGCATGGCCGGTGTGATCACCGCCAATCTGACGG
GCATAATGATGACCATTAAGGGCACTCCGTCCACCTACAACAAGGACTTG
CAGTACGACAAGCAATTCTGCTTCCAGTCCTTCGACAAGCTGTCCCAAGT
GCTCGAGGTTACCGATGGTGTCCTACAGACGATTCAGGTCAAGCAGGAAT
CAATGGAGGCGGCACTTAGCACAGACATGCTGGCCACTGACTGGGCCTAC
TATCTGGTGAAGAAGGGGGTTCCATTCCGCCAGGCGCATCACATTATCGG
TCGCGTGGTCTCGGAGGCCGAAAAGCGCGGTGTGGACATCACTGATTTGC
CGCTGGGAGATCTCCAGAAATTCAGTCCTTTATTTGGATCGGATATCGTT
GCAGTGGCGGACTACTCCAACAATGTCCAGCAATATAATGCGATTGGTGG
AACCGCCAGTAGCAGCATCGTGGAACAACTGCGTTTGCTCAAGAAGTGCG
CAAGGGATTTGGCCAAACAGTCGTAGAAGCTTTCTAGACCTATTCGTGTG
GCGCTGCGAGGCGGGGGGGGGGGGTTA
BS26232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9510-RD | 1410 | CG9510-PD | 1..1410 | 17..1426 | 7035 | 99.9 | Plus |
| CG9510-RC | 1410 | CG9510-PC | 1..1410 | 17..1426 | 7035 | 99.9 | Plus |
| CG9510-RB | 1410 | CG9510-PB | 1..1410 | 17..1426 | 7035 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9510-RD | 1640 | CG9510-RD | 39..1449 | 16..1426 | 7040 | 99.9 | Plus |
| CG9510-RC | 1922 | CG9510-RC | 381..1791 | 16..1426 | 7040 | 99.9 | Plus |
| CG9510-RB | 1580 | CG9510-RB | 39..1449 | 16..1426 | 7040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8940994..8941725 | 747..16 | 3645 | 99.9 | Minus |
| 2L | 23513712 | 2L | 8940254..8940658 | 1145..741 | 2010 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8939916..8940198 | 1426..1144 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:49:37 has no hits.
BS26232.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:50 Download gff for
BS26232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9515-RA | 1257..2673 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:43 Download gff for
BS26232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9510-RB | 40..1456 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:21 Download gff for
BS26232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9510-RB | 40..1456 | 17..1436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:21 Download gff for
BS26232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8939909..8940197 | 1145..1436 | 98 | <- | Minus |
| 2L | 8940255..8940655 | 744..1144 | 99 | <- | Minus |
| 2L | 8940998..8941724 | 17..743 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:43 Download gff for
BS26232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8939909..8940197 | 1145..1436 | 98 | <- | Minus |
| arm_2L | 8940255..8940655 | 744..1144 | 99 | <- | Minus |
| arm_2L | 8940998..8941724 | 17..743 | 100 | | Minus |
BS26232.pep Sequence
Translation from 16 to 1425
> BS26232.pep
MTQIPESCYKMWGGRFTEGPHEALHSLNNSLPYDSRLYADDLDASKAYAE
ALHRAGLINSAEADKLVKNLELLRFDWIEGTVKILPGDEDVHTVNERLLV
EITGELGQRLHTGRSRNDQVVTDMKLWLRKAIRETLGRLSGIIETATRQA
ELHLGVLMPGYTHLQRAQTVQFSHWLLSHAFALREDGQRLLELRDRANVL
PLGSGALAGNPLGIDRLWLAERLGFSGVTANSMHAVGDRDFVVDFIYCCS
MVSLHLSRLAEDLIIYSTKEFDFIKLADGFSSGSSLMPQKRNPDSLELIR
GMAGVITANLTGIMMTIKGTPSTYNKDLQYDKQFCFQSFDKLSQVLEVTD
GVLQTIQVKQESMEAALSTDMLATDWAYYLVKKGVPFRQAHHIIGRVVSE
AEKRGVDITDLPLGDLQKFSPLFGSDIVAVADYSNNVQQYNAIGGTASSS
IVEQLRLLKKCARDLAKQS*
BS26232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9510-PD | 469 | CG9510-PD | 1..469 | 1..469 | 2404 | 100 | Plus |
| CG9510-PC | 469 | CG9510-PC | 1..469 | 1..469 | 2404 | 100 | Plus |
| CG9510-PB | 469 | CG9510-PB | 1..469 | 1..469 | 2404 | 100 | Plus |
