BS26295.complete Sequence
1904 bp assembled on 2011-10-14
GenBank Submission: KX800519
> BS26295.complete
GAAGTTATCAGTCGACATGTTGGAAGTGGTTTTTGGGCGAGGAATGGAAC
TGGAGCCGCGAGTGGCCATACTGCAGGACCTGCGCCTGCAGACCTTCGAC
TCCATTCGATTTGCCTCCTACCGCACCGCCTCCAAGCTGCGCTATATACA
GAAGTCCACAAATCTGCACTTGGTGGACATATGGAATGTGATCGAGGCCT
TTCGCGAGAATGGCCTGAACACCCTGGAGCCGCAGAGCGAGGTGAGCGTG
GCCAGGCTGGAAACCCTGGTCTCCTCCCTCTATCATAACCTCAACAAGCG
CCTGCCCACCGCTCAGCAGGTGCCTGTGGACTCGAAGGCGGGTCTGCTGC
TCAACTGGCTGCTGGCCGCGTACACAAGTGATAACTCGGGCAAGATACGC
GTTTTCTCCATCAAAGTGGCCCTGGCCACTATGTGCTCTGGCAAGCTGGT
GGACAAACTAAGATACATATTCTCGCAGATCTCGGATGGCGCTGGACAGC
TGGTGGCCTGGAAGCTGGGCGAGTTCCTGCGCGAAGTGCTGGCCCTGCCG
GCGGCCGTGTACGAGTCGCCCACATTCCACTACAAGGAGGGGCTCGAGGA
GGAGATCTTCCCGGCCGAGAATAAGGTGACGGTGAACGACTTTATGGCCA
CGCTGATGTCCGAGCCGGGGCCGTCCTGCCTCGTCTGGCTGCCGCTGGTG
CACCGGCTGGCCACCGTGGAGACCATTGTGCATCCGACTGTCTGCTCTGT
TTGCCACAAGGAAAACTTCACCGGGTTTCGTTATCGCTGTCAGCGGTGTC
ACGCCTACCAGTTGTGTCAGGAGTGCTTCTGGCACGGCAAGACATCGCTG
AATCACCAGAACGATCACGAGGTCAAGGAGTACTCGAGCTACAAGTCGCC
CAGCAAACAGATCGGTCACTCGCTGCGCAAGAGCTTCCGCTGTGTGCCCG
AGAAGACGGTGCAGGTGCTCCCTCGCTTCCCCGACCAGCCGGAGAAGACG
CTCAACCTGTCGCACATCGTGCCGCCCTCGCCGCTGCCATCGCACAACGG
CTTCTCGGACCCCTCGGGCCTCGTACATGGCCACCACGGCCCGCATCCGG
GTCTCCCGGGCCAGCACGGCCTTTTCGATCGCTCCAGCACGCTCGACTCG
CGGGCCACAGGCCGCAGTCTGGACAGCGCCAGCGGCACGGCCGGCACAAC
CATGTCTCGCGTGGCCGCCGCTTCTGCCAACGACGAGGAGCACCGCCTGA
TTGCCCGCTATGCCGCCAGATTGGCCCAGGAAAACCGAGCGCCATCCAAC
TTGCCCGACAATGCCACACCAATTGGCACAGATAACTCGCGAGCCCAACG
CGAGCTAATTGCCCAACTGGAGTCCAAGAATAAGGAGATAATGCGGGAGA
TAGCGCGCCTGAGGCGTCAACAGGAGACGGAGCAGATGGCGCCAGAGAAT
CCGGCGCTAATCAATGAACTGCGTGCTCTAAGGCAGCGGAAAGGAGAACT
GGAGGGCCATTTGGGTGCTCTGCAGGATTCGCGACGACAGCTAATGGAGC
AACTGGAGGGACTGATGCGAATGCTGAAGAACCAGCAGACAGCATCGCCT
CGATCCACGCCCAACTCGAGTCCTCGTTCCGGTAAATCCCCACCAATGCC
CGGCGGAGCTGGAATCCTGGGTACATCCCCCATGAGTGCTCTACACGCCC
AGCAGATGCAGCAACATCCGATGGCCGGAGGAGTCAGAGCCAGCCAGCAG
CAACTCCTCCAACAGCAACAGCAGCAGGCTCATGGCCACGGGCCATTTAG
CCAGAGCCAGCTGGAGCAGCTCAACCAGATTAGCAGCGATATGCGCAGCG
CCTTCGCCGCCAACGGAAGTGCAAGCAAATGCGAATAGAAGCTTTCTAGA
CCAT
BS26295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyb-RC | 1872 | CG8529-PC | 1..1872 | 17..1888 | 9360 | 100 | Plus |
| Dyb-RH | 1968 | CG8529-PH | 1..1858 | 17..1874 | 9290 | 100 | Plus |
| Dyb-RA | 1845 | CG8529-PA | 1..1845 | 44..1888 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyb-RC | 2845 | CG8529-RC | 46..1917 | 17..1888 | 9360 | 100 | Plus |
| Dyb-RH | 2889 | CG8529-RH | 46..1903 | 17..1874 | 9290 | 100 | Plus |
| Dyb-RA | 3326 | CG8529-RA | 546..2398 | 36..1888 | 9265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12448312..12449138 | 465..1291 | 4135 | 100 | Plus |
| 2R | 25286936 | 2R | 12449199..12449783 | 1291..1875 | 2925 | 100 | Plus |
| 2R | 25286936 | 2R | 12447758..12448100 | 36..378 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 12448161..12448248 | 377..464 | 440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6916 | 1700..1878 | 167 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2519 | 1700..1884 | 139 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6818 | 1744..1849 | 124 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2390 | 1699..1777 | 118 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1588 | 1695..1779 | 115 | 67.1 | Plus |
BS26295.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:18 Download gff for
BS26295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 61..1927 | 22..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:38 Download gff for
BS26295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 51..1917 | 22..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:13 Download gff for
BS26295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 51..1917 | 22..1888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:13 Download gff for
BS26295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12447759..12448100 | 37..378 | 100 | -> | Plus |
| 2R | 12448163..12448248 | 379..464 | 100 | -> | Plus |
| 2R | 12448312..12449138 | 465..1291 | 100 | -> | Plus |
| 2R | 12449200..12449782 | 1292..1874 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:38 Download gff for
BS26295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8335264..8335605 | 37..378 | 100 | -> | Plus |
| arm_2R | 8335668..8335753 | 379..464 | 100 | -> | Plus |
| arm_2R | 8335817..8336643 | 465..1291 | 100 | -> | Plus |
| arm_2R | 8336705..8337287 | 1292..1874 | 100 | -> | Plus |
BS26295.pep Sequence
Translation from 16 to 1887
> BS26295.pep
MLEVVFGRGMELEPRVAILQDLRLQTFDSIRFASYRTASKLRYIQKSTNL
HLVDIWNVIEAFRENGLNTLEPQSEVSVARLETLVSSLYHNLNKRLPTAQ
QVPVDSKAGLLLNWLLAAYTSDNSGKIRVFSIKVALATMCSGKLVDKLRY
IFSQISDGAGQLVAWKLGEFLREVLALPAAVYESPTFHYKEGLEEEIFPA
ENKVTVNDFMATLMSEPGPSCLVWLPLVHRLATVETIVHPTVCSVCHKEN
FTGFRYRCQRCHAYQLCQECFWHGKTSLNHQNDHEVKEYSSYKSPSKQIG
HSLRKSFRCVPEKTVQVLPRFPDQPEKTLNLSHIVPPSPLPSHNGFSDPS
GLVHGHHGPHPGLPGQHGLFDRSSTLDSRATGRSLDSASGTAGTTMSRVA
AASANDEEHRLIARYAARLAQENRAPSNLPDNATPIGTDNSRAQRELIAQ
LESKNKEIMREIARLRRQQETEQMAPENPALINELRALRQRKGELEGHLG
ALQDSRRQLMEQLEGLMRMLKNQQTASPRSTPNSSPRSGKSPPMPGGAGI
LGTSPMSALHAQQMQQHPMAGGVRASQQQLLQQQQQQAHGHGPFSQSQLE
QLNQISSDMRSAFAANGSASKCE*
BS26295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyb-PC | 623 | CG8529-PC | 1..623 | 1..623 | 3230 | 100 | Plus |
| Dyb-PH | 655 | CG8529-PH | 1..620 | 1..620 | 3208 | 99.8 | Plus |
| Dyb-PA | 614 | CG8529-PA | 1..614 | 10..623 | 3185 | 100 | Plus |
| Dyb-PI | 702 | CG8529-PI | 1..611 | 10..620 | 3163 | 99.8 | Plus |
| Dyb-PF | 816 | CG8529-PF | 1..611 | 10..620 | 3163 | 99.8 | Plus |
