BS26309.complete Sequence
860 bp assembled on 2011-09-14
GenBank Submission: KX800415
> BS26309.complete
GAAGTTATCAGTCGACATGGAAAGATTTGGTATTCCACGTGGTAAGCGTC
CCCGAGTCCAAGTTTCATTGGACGACAAGGAGCGAGCCATAGCCCGAATC
CGAGGTGGTGAAACCAAGGCCGGAATATCACGCGAATTGGGTGTTCCGGA
GTCTACGGTTCGCGGTTGGGTGAAACGAGCTGAGCAGCGGTTGGCCCGAG
AGACAACTAGCCAAACGGGTTCTGCCAACTATTCCACAATCCTGGCCATG
ACCCTAGCGAAACCGCAAGTTACCATCAGCACAAAATCGTCGGCTTCGTC
TGTCATTTCTAAATCATCATACTCATCGCCACCGCTGGATTTGAAACCCC
TGAAACAGCCCCAGAAACGAAACATTAATGGTCATCCGGTAACGTGCACC
CAGGATCCAGTCGAGGATTCAGCAGCTACATCCATCCCCATCCCCGTTCC
GATTCCGGTGCCCCTTCCTGTGCCGCCAATGGTTTCGCCTGACAGTGAGC
AACAGATGAGCGCTTGGTTGCATATATTCAATGCGGGAATTCTGAACTTC
ACTCTGATTGCCTCCGCTGCAGTGCTTCAGGCTCGCTCGCGTGGTTTGGC
GGATCGCCTGCCGTTGTGGCAAATTATCACGGATTTTGTTGATGAAGCCG
AACGTAATGTGAATGCCAACGGGGGTTGGTACCTCGAGGGACAGCCGGCG
ACAGGACACATGAGTGCCAGGCAACGGCCAGTCCGAGTGCCCACGAAGGT
GCATTCATATCGCAGGAACTTGAAGGCACCACCGGCTCATATTACCGCCG
AAGATGACGAAGACTCCTACACGGACGCTGATGTGCCACACTGAAAGCTT
TCTAGACCAT
BS26309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-RC | 828 | CG30401-PC | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG30401-RA | 828 | CG30401-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-RC | 1188 | CG30401-RC | 225..1052 | 17..844 | 4140 | 100 | Plus |
| CG30401-RA | 1258 | CG30401-RA | 295..1122 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21985762..21986395 | 844..211 | 3155 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21986441..21986644 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:29:56 has no hits.
BS26309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:39 Download gff for
BS26309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:34 Download gff for
BS26309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 173..999 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:55 Download gff for
BS26309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 295..1121 | 17..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:55 Download gff for
BS26309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21986443..21986644 | 17..218 | 100 | | Minus |
| 2R | 21985763..21986387 | 219..843 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:34 Download gff for
BS26309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17873268..17873892 | 219..843 | 100 | <- | Minus |
| arm_2R | 17873948..17874149 | 17..218 | 100 | | Minus |
BS26309.pep Sequence
Translation from 16 to 843
> BS26309.pep
MERFGIPRGKRPRVQVSLDDKERAIARIRGGETKAGISRELGVPESTVRG
WVKRAEQRLARETTSQTGSANYSTILAMTLAKPQVTISTKSSASSVISKS
SYSSPPLDLKPLKQPQKRNINGHPVTCTQDPVEDSAATSIPIPVPIPVPL
PVPPMVSPDSEQQMSAWLHIFNAGILNFTLIASAAVLQARSRGLADRLPL
WQIITDFVDEAERNVNANGGWYLEGQPATGHMSARQRPVRVPTKVHSYRR
NLKAPPAHITAEDDEDSYTDADVPH*
BS26309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-PC | 275 | CG30401-PC | 1..275 | 1..275 | 1418 | 100 | Plus |
| CG30401-PA | 275 | CG30401-PA | 1..275 | 1..275 | 1418 | 100 | Plus |
| danr-PA | 419 | CG13651-PA | 16..66 | 8..59 | 156 | 61.5 | Plus |
