BS26311.complete Sequence
631 bp assembled on 2011-08-24
GenBank Submission: KX800410
> BS26311.complete
GAAGTTATCAGTCGACATGGTCATCATGATATTTGTGCTGCTACTCTTAT
TAGGAGTGACCAGTTCCTGGGCCACAGACTATGAATTATTGCTCGAGGAT
CCGGACATATTTTCGACGTGCACTGATGGTCCTCCCGGATCCATCAACAT
CCGCCAGGCACTCAACTTAGACGACATTGTAATCGACCAGAAAGGGGATA
TACTTCATGTATCCGGGAACGCCACCGTCGTGTGGGATGTGCAGCCCACC
GATCGGATTACTGCGAGACTTGATGTTTTTCACTTCAACCGCGGCACTTG
GGAGCCCACTGTCTTTAGCATGGCCACCCAGAACTTTTGCTCCATCATGT
ACGACAAGAACCAGTATTGGTATAAGTATTGGACAAGGTTTATAACCAAT
CGCCATGAGGTGGAAAAGAAGTGCTTCAGAGGGCCTGATACCGTTCTGGT
ACACGAGCCCTTCGATCTCATACTAAAATTTGAGAATTTTCGTGGACCTC
TTCTTAGAGGACGTCATAAACTTGTCATATTGTTTAACGCACTAGATGAG
AGGAATATACCGCGCCCAAACCCAATTTGTTTGGAGATCATAGGAGAACC
ACTAAAGTTGCAGTAGAAGCTTTTAGACCAT
BS26311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42b-RA | 591 | CG33351-PA | 1..591 | 26..616 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42b-RA | 674 | CG33351-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6943749..6943995 | 263..17 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 6943170..6943346 | 616..440 | 885 | 100 | Minus |
2R | 25286936 | 2R | 6943507..6943683 | 439..263 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:54:18 has no hits.
BS26311.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:53 Download gff for
BS26311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42b-RA | 1..589 | 26..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:44 Download gff for
BS26311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42b-RA | 1..598 | 17..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:13 Download gff for
BS26311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42b-RA | 1..598 | 17..614 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:13 Download gff for
BS26311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6943172..6943346 | 440..614 | 100 | <- | Minus |
2R | 6943507..6943683 | 263..439 | 100 | <- | Minus |
2R | 6943750..6943995 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:44 Download gff for
BS26311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2831012..2831188 | 263..439 | 100 | <- | Minus |
arm_2R | 2830677..2830851 | 440..614 | 100 | <- | Minus |
arm_2R | 2831255..2831500 | 17..262 | 100 | | Minus |
BS26311.pep Sequence
Translation from 16 to 615
> BS26311.pep
MVIMIFVLLLLLGVTSSWATDYELLLEDPDIFSTCTDGPPGSINIRQALN
LDDIVIDQKGDILHVSGNATVVWDVQPTDRITARLDVFHFNRGTWEPTVF
SMATQNFCSIMYDKNQYWYKYWTRFITNRHEVEKKCFRGPDTVLVHEPFD
LILKFENFRGPLLRGRHKLVILFNALDERNIPRPNPICLEIIGEPLKLQ*
BS26311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42b-PA | 196 | CG33351-PA | 1..196 | 4..199 | 1058 | 100 | Plus |
CheB42c-PB | 196 | CG33350-PB | 4..195 | 7..198 | 633 | 56.8 | Plus |
CheB38c-PA | 198 | CG14405-PA | 5..197 | 7..199 | 524 | 46.1 | Plus |
CheB38b-PA | 197 | CG33321-PA | 5..192 | 7..194 | 485 | 42 | Plus |
CheB38a-PA | 197 | CG33320-PA | 7..197 | 9..199 | 477 | 43.5 | Plus |