Clone BS26313 Report

Search the DGRC for BS26313

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:263
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG41106-RA
Protein status:BS26313.pep: full length peptide match
Sequenced Size:404

Clone Sequence Records

BS26313.complete Sequence

404 bp assembled on 2011-08-24

GenBank Submission: KX803997

> BS26313.complete
GAAGTTATCAGTCGACATGGAGGACACAGATCAGGAAGACCTGCTGGCTT
TCGAGCGTCGGCTGGCTGAGGTGGTAAACACTGAGAAACGGAGTTCACTC
CGCTGGCGCTTTGTTCTGGGCGCCATCTTCGCCTGCTCGGCGATCAGTGC
CTGTCATTGGGTTCGGGATGCCAAGGAAAGCGAGTCGGTGGTTTTCCAAA
TCCTGTCCAGTCAAAGCGCCTTTGCCTTCTCCCTGGCAACCATATGCCTG
CTAATCTTTTATGGATTCAATCACGCCACTAAGCAGGACCCCAGTATCCT
GCGTGACACCCAAGAAATGCTGTCTCCGTTCCGCCTTAACATTGATAACC
AGGGACGTCTCATCCTACTTCCACGGCAGACAGAGTAGAAGCTTTCTAGA
CCAT

BS26313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG41106-RA 372 CG41106-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG41106-RA 957 CG41106-RA 165..536 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22945485..22945856 17..388 1860 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:57:11 has no hits.

BS26313.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:59 Download gff for BS26313.complete
Subject Subject Range Query Range Percent Splice Strand
CG41106-RA 165..536 17..388 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:56 Download gff for BS26313.complete
Subject Subject Range Query Range Percent Splice Strand
CG41106-RA 165..536 17..388 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:26 Download gff for BS26313.complete
Subject Subject Range Query Range Percent Splice Strand
CG41106-RA 165..536 17..388 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:26 Download gff for BS26313.complete
Subject Subject Range Query Range Percent Splice Strand
X 22945485..22945856 17..388 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:56 Download gff for BS26313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22347321..22347692 17..388 100   Plus

BS26313.pep Sequence

Translation from 16 to 387

> BS26313.pep
MEDTDQEDLLAFERRLAEVVNTEKRSSLRWRFVLGAIFACSAISACHWVR
DAKESESVVFQILSSQSAFAFSLATICLLIFYGFNHATKQDPSILRDTQE
MLSPFRLNIDNQGRLILLPRQTE*

BS26313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG41106-PA 123 CG41106-PA 1..123 1..123 624 100 Plus
CG8009-PA 127 CG8009-PA 1..122 1..122 205 37.7 Plus
CG8009-PB 131 CG8009-PB 1..126 1..122 189 36.5 Plus