BS26314.complete Sequence
1229 bp assembled on 2011-08-24
GenBank Submission: KX804328
> BS26314.complete
GAAGTTATCAGTCGACATGTTGGCCGCTGGCAGCAGTGAGATCACTGACT
TTGGGCCACACTCGCGCCAACTAACGGCTGGCAACACGCCCAAGCGACCC
AACAAGGCCAGCAGCCACCGTCCTGGTTCTGGTTCTGGTCCTGGCCCAAT
GACAACTGGTGGCACCAGCTCAGCGAGCGGTAACGGAAACAGCGGTGGGG
CTCTGAACGCCATTCCCACGACGAAGGTCGGGAGCGGAGGAGGCGGCGGA
GGCGCCATGTCCGCCACAACGGTGACTGCGACGACGGGGAAAGCTACTGT
AAGCCATGGCCATAGTCATGGCCACGCTCTGGGGCGCAGCGAGACGAGGA
GCGGTCGGAGCGCAGCAGCTGGACGCTCCAATGTGGACGGATTCGTTGGC
GGAATCGAGACGTACTTGGGCCTCATCGGGTGGCGAAAAAAGTGCCTGTA
TACCCTGCTGCTACTGCTGATGCTGCTCATCATCACGAACCTGGTGCTCA
CCCTCTGGATACTCAAGGAGGGCATGGGGCAGCTTAAAATCGTACCCGGT
GGCATACAGCTGTCCGGACAAGCGATAATTATGGACATGCTGCGCGCCTC
CACAATCCGTTCGCGGCACGGTCAACCCATTTCCATAGAGTCATCACGTA
ACTTTTCAATCAATACACGTGATCCGAATGGCATGATTGAGAATCATTTA
TTCCTGGGACACGATAAGTTCGAGTGCCTGTCGGCGGGATTTCGCATAAA
CGACACCAACGGACGCAGCCTGTTCTCCGTGAACCGAGATGAAGTCACCA
TCGGAGCACATGCCCTGCGGATCGACGGCGAAGGTGGCGCCGTCTTCCGG
GAATCCGTGCAGACGCCCCATGTGCGGGCCGAGCCCGGCCGGGAGCTGAG
ACTCGAATCGCCCACACGCCAATTGGAGATGACGGCGGCCAAGGACATCA
ATTTGCAATCGCGGGCAGGAGGCATAGAAGTCGTGGCCCTGGAAGACGTC
AAGTTCCGAGCCCTCGATGGGAGCCTGCGCCTGGAGTCCTCCAAGATACT
TATGCCCAACCTGCGGACGGCCCAGCCGCCCATTCTGGGCACTGCCCAAA
GCAGGGATCACATGCACCGCGTCTTCCAACTCTGCGCCTGTTCCAATGGC
AAGCTTTTCCTCGCTGCACCCCACTCCATATGTGCCGGCGATGATTCCAC
GGTCTGCAGATGAAAGCTTTCTAGACCAT
BS26314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 1215 | CG14808-PE | 1..1215 | 17..1213 | 5770 | 98.5 | Plus |
| Scgdelta-RD | 1215 | CG14808-PD | 1..1215 | 17..1213 | 5770 | 98.5 | Plus |
| Scgdelta-RC | 1215 | CG14808-PC | 1..1215 | 17..1213 | 5770 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 2972 | CG14808-RE | 422..1636 | 17..1213 | 5770 | 98.5 | Plus |
| Scgdelta-RD | 2336 | CG14808-RD | 609..1823 | 17..1213 | 5770 | 98.5 | Plus |
| Scgdelta-RC | 2966 | CG14808-RC | 416..1630 | 17..1213 | 5770 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1749912..1750413 | 518..17 | 2510 | 100 | Minus |
| X | 23542271 | X | 1748032..1748302 | 900..630 | 1325 | 99.3 | Minus |
| X | 23542271 | X | 1746391..1746579 | 1213..1025 | 945 | 100 | Minus |
| X | 23542271 | X | 1746687..1746812 | 1024..899 | 630 | 100 | Minus |
| X | 23542271 | X | 1749697..1749819 | 638..516 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:57:55 has no hits.
BS26314.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:39:59 Download gff for
BS26314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RD | 614..1099 | 22..507 | 100 | -> | Plus |
| Scgdelta-RD | 1110..1822 | 508..1212 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:14 Download gff for
BS26314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 427..912 | 22..507 | 100 | -> | Plus |
| Scgdelta-RA | 923..1635 | 508..1212 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:44 Download gff for
BS26314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RC | 421..906 | 22..507 | 100 | -> | Plus |
| Scgdelta-RC | 917..1629 | 508..1212 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:44 Download gff for
BS26314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1748032..1748293 | 639..900 | 100 | <- | Minus |
| X | 1746687..1746810 | 901..1024 | 100 | <- | Minus |
| X | 1749697..1749817 | 518..638 | 100 | <- | Minus |
| X | 1746392..1746579 | 1025..1212 | 100 | <- | Minus |
| X | 1749913..1750408 | 22..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:14 Download gff for
BS26314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1640425..1640612 | 1025..1212 | 100 | <- | Minus |
| arm_X | 1640720..1640843 | 901..1024 | 100 | <- | Minus |
| arm_X | 1642065..1642326 | 639..900 | 100 | <- | Minus |
| arm_X | 1643730..1643850 | 518..638 | 100 | <- | Minus |
| arm_X | 1643946..1644441 | 22..517 | 100 | | Minus |
BS26314.pep Sequence
Translation from 16 to 1212
> BS26314.pep
MLAAGSSEITDFGPHSRQLTAGNTPKRPNKASSHRPGSGSGPGPMTTGGT
SSASGNGNSGGALNAIPTTKVGSGGGGGGAMSATTVTATTGKATVSHGHS
HGHALGRSETRSGRSAAAGRSNVDGFVGGIETYLGLIGWRKKCLYTLLLL
LMLLIITNLVLTLWILKEGMGQLKIVPGGIQLSGQAIIMDMLRASTIRSR
HGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDTNGR
SLFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPT
RQLEMTAAKDINLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLR
TAQPPILGTAQSRDHMHRVFQLCACSNGKLFLAAPHSICAGDDSTVCR*
BS26314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-PE | 404 | CG14808-PE | 1..404 | 1..398 | 2030 | 98.5 | Plus |
| Scgdelta-PD | 404 | CG14808-PD | 1..404 | 1..398 | 2030 | 98.5 | Plus |
| Scgdelta-PC | 404 | CG14808-PC | 1..404 | 1..398 | 2030 | 98.5 | Plus |
| Scgdelta-PA | 404 | CG14808-PA | 1..404 | 1..398 | 2030 | 98.5 | Plus |
