BS26316.complete Sequence
1961 bp assembled on 2011-09-21
GenBank Submission: KX802680
> BS26316.complete
GAAGTTATCAGTCGACATGGATAATTCCAATGGAATCCACTACATTGAGC
TAACCCCAAATCCCATACGATTTGATGCTGTCAGCCAACTAACCAATGTG
TTTTTCGATGACTCCAACAAGCAGATATTTGCTGTTCGGTCTGGAGGAGC
TACTGGTGTGGTGGTCAAAGGTCCTGGATCTCCCGACGATGTCGTCATCT
CCTTTTGCATGAGCGACCGTGGCGGTGCCATAAGGTCCATTAAGTTCTCG
CCGGACAACCAAATCTTGGCCGTTCAGCGAAAGGAGAATTCCGTGGAGTT
CATATGTTTTCAGGGAGATCAGCCTCTGCTGCAGGACATCATTACCCACC
AGGTGAAGACTCTGATCCATGGCTTTGTTTGGGTCCACAATCGGGAGGTG
GCCCTGATTTCGAATACCGGCGTGGAGGTCTACACCGTAGTTCCTGAGAA
GCGACAGGTGCGCTCTGTGAAATCCCTGAGCATTGGCATCAAGTGGTTCG
CCTGGTGCTGCGATGCCAATGTGGCTCTACTGTGCACCAGCGAAGGAAAC
TCCCTGATTCCGGTGCTGGTCAAGCAGAAAGTAATCACCAAGCTGCCCAA
AGTGGACTTGGGCAATCCAAGTCGCGATGTCCAGGAGAGCAAGGTCACCT
TAGGCCAAGTTTACGGCGTGCTGGCTGTGCTTATCCTCCAGTCAAATAGC
ACCACCGGACTGATGGAAGTCGAGGTGCACTTGCTCAATGGACCGGGCTT
GGCTCCACGCAAGTGCCATGTGCTCCGCTTAAGTCTGCTTGGTCGCTTCG
CCATCAACACGGTGGATAATCTGATTGTGGTGCACCATCAAGCTTCGGGC
ACTTCGCTGCTATTCGACATCTCCCTGCCCGGAGAGGTGATCAATGAAAT
AACCTATCATACACCCATAACTCCAGGGCGCTCCATCAAACCGTTTGGCC
TGAAACTGCCCTCACTTTCGCCTGATGGACAAATCTTGCAGTGCGAGTTG
TATTCCACGCACTGGGTACTGTTCCAGCCAAATATTGTAATCGATGCCAA
GTTGGGTTGCATGTGGTTTTTGAACCTCTGCATTGAACCATTGTGCCAAC
TGATTTCGGATCGCATTCGACTTACAGAATTCCTGCTGCAACGCAGCAAT
GGCAAGCAGATGCTATTAAAAGTCATTGGACAATTGGTAGATGATCAGTA
TAAGGGAACTCTATTGCCAGTCCTAGAGACCATCTTCAGTCGGATTAACA
AGATCTATGCGTCTTGGGTCCAGTTGGAGCTGCAAAATCAAACCGCTCAA
CCGTCGAACGTAAAAACTACTACCCTGAAACAGAGCACACCGCCCATTGT
GCTCATTGAGCAACTGGATATGGTGCAAATCTTTCAGCGCATAGCTCGTC
GCCCGTACACGGAATCCATATTGATGCTCTACCTGCAATCCCTGAACAAG
TTCAACATTGCCGCCCAGGAGGAGCTGAGCAAGATGATCATCAGCGAGCT
GATCTCCAATCGCAGCTTCGACACCTTGCGACGCTTGGTCAGCTATTCAA
TGCTGCTGGAATCCAAGTCGGTGGCTTGCTTTTTGTTGTCGCATTCAAAT
GTGGATACGGCGATATCCCAGGTGGCCATCGATATGCTGGGCAGGATTGA
AGCACATGAGATCATCATTGAAGTAATGCTGGGTCAAGGCAAAGTTATTG
ATGCCTTAAGGCTGGCTAAGAATTCAATGGGTCTGGAAAAAGTGCCAGCT
CGCAAGTTTCTGGAGGCGGCTCATAAGACAAAGGATGATCTAATATTCCA
CAGCGTATACCGCTTTTTCCAAATGAGAAACCTGAAACTTTATGAAACCC
TATCTTTTCCCAAGGCTGAACAATGCACGGAATTCATACAGCATTATAAT
AACACTTTTCCTGCTGATAATCCTACCAGACAGCCTGTAAGCTAAAAGCT
TTCTAGACCAT
BS26316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8270-RB | 1929 | CG8270-PB | 1..1929 | 17..1945 | 9630 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8270-RB | 2170 | CG8270-RB | 81..2010 | 17..1946 | 9635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6488928..6489413 | 123..608 | 2415 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6490239..6490638 | 1261..1660 | 2000 | 100 | Plus |
| 3L | 28110227 | 3L | 6489470..6489862 | 609..1001 | 1965 | 100 | Plus |
| 3L | 28110227 | 3L | 6489918..6490178 | 1002..1262 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 6490697..6490903 | 1659..1865 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 6488761..6488872 | 17..128 | 545 | 99.1 | Plus |
| 3L | 28110227 | 3L | 6490969..6491050 | 1865..1946 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:01 has no hits.
BS26316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 14:00:49 Download gff for
BS26316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8270-RB | 86..2012 | 17..1943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:41 Download gff for
BS26316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8270-RB | 81..2007 | 17..1943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:22 Download gff for
BS26316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8270-RB | 81..2007 | 17..1943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:22 Download gff for
BS26316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6490970..6491047 | 1866..1943 | 100 | | Plus |
| 3L | 6488761..6488868 | 17..124 | 100 | -> | Plus |
| 3L | 6488930..6489413 | 125..608 | 99 | -> | Plus |
| 3L | 6489470..6489862 | 609..1001 | 100 | -> | Plus |
| 3L | 6489918..6490176 | 1002..1260 | 100 | -> | Plus |
| 3L | 6490239..6490638 | 1261..1660 | 100 | -> | Plus |
| 3L | 6490699..6490903 | 1661..1865 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:41 Download gff for
BS26316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6481861..6481968 | 17..124 | 100 | -> | Plus |
| arm_3L | 6482030..6482513 | 125..608 | 99 | -> | Plus |
| arm_3L | 6482570..6482962 | 609..1001 | 100 | -> | Plus |
| arm_3L | 6483018..6483276 | 1002..1260 | 100 | -> | Plus |
| arm_3L | 6483339..6483738 | 1261..1660 | 100 | -> | Plus |
| arm_3L | 6483799..6484003 | 1661..1865 | 100 | -> | Plus |
| arm_3L | 6484070..6484147 | 1866..1943 | 100 | | Plus |
BS26316.pep Sequence
Translation from 16 to 1944
> BS26316.pep
MDNSNGIHYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAVRSGGATGVVV
KGPGSPDDVVISFCMSDRGGAIRSIKFSPDNQILAVQRKENSVEFICFQG
DQPLLQDIITHQVKTLIHGFVWVHNREVALISNTGVEVYTVVPEKRQVRS
VKSLSIGIKWFAWCCDANVALLCTSEGNSLIPVLVKQKVITKLPKVDLGN
PSRDVQESKVTLGQVYGVLAVLILQSNSTTGLMEVEVHLLNGPGLAPRKC
HVLRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGEVINEITYHTP
ITPGRSIKPFGLKLPSLSPDGQILQCELYSTHWVLFQPNIVIDAKLGCMW
FLNLCIEPLCQLISDRIRLTEFLLQRSNGKQMLLKVIGQLVDDQYKGTLL
PVLETIFSRINKIYASWVQLELQNQTAQPSNVKTTTLKQSTPPIVLIEQL
DMVQIFQRIARRPYTESILMLYLQSLNKFNIAAQEELSKMIISELISNRS
FDTLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDMLGRIEAHEII
IEVMLGQGKVIDALRLAKNSMGLEKVPARKFLEAAHKTKDDLIFHSVYRF
FQMRNLKLYETLSFPKAEQCTEFIQHYNNTFPADNPTRQPVS*
BS26316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8270-PB | 642 | CG8270-PB | 1..642 | 1..642 | 3280 | 100 | Plus |
