BS26318.complete Sequence
887 bp assembled on 2011-08-24
GenBank Submission: KX804979
> BS26318.complete
GAAGTTATCAGTCGACATGGCCACAAGCGCGAACTCTGTTCAAGTTTCTG
GAGCCGGTGCGGAGGTAAACGAAGCTAAACTCATCTGCATCTGGGAGGGA
ATAACTGAGCTGATCCTGTGGCGCAACTGGATAAAGTCGATGCTTGTATT
CGTAATGCTACAGACCATAATTTATGATCTGCTTTCTGAACCGCTTGTGT
TCGTGGTGAGCGTATGGGCTTTGATTATCATGGTCATATCAATGGGGTAC
CGTTTTTTGGTACAGTACACTAATACCCATATCCAGAACAACAGCTATCC
GAAATATCTTGACATAGACCTAAGAATCTCCCAGGAGTTATCTAAGCAAC
TGGGTGTTCTAGTTTCAACCAAAGTTGTTGCGTTTCTAAATAATCTACGA
GAGATATTACTAGTAAAGAGCTTTTCGAAATCATTCAAGTGGTTTGGCCT
TCTCCTAATAATTAGCAAACTTGGAAAGCAGATTAACTTTCTAATTGTTG
GCCAATTAGGGCTGTTTCTACTCTTCACAATTCCCAAAATGTGTGAGATG
AATAGACGTTCATCAAATATTGTACAACTTCCTAAATTTAATAAACAATA
TCAAATTACCAAAGTAAACGCTTCGACCGAAACCCAGAATGCATTGGACA
TGGAATCCTTAAAAGAGTGCAACGAGGACACCATAAAGCTAATTGAAAAG
CAACCAGAAGGGATGGATCTCTCACTCGGCTGTGATATTACCAAGGAATC
CCAGAATGCGGCTGATGATCTTAAAGCCTTTAAAGTAAAGGAGGAAATAG
ACATTGATGCTTTTGAGCGACTTGCCGATTCCTGGTCCGACGAAGATACA
CTTACTGATCAAAAAAATTAAAAGCTTTCTAGACCAT
BS26318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42853-RA | 855 | CG42853-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42853-RA | 1001 | CG42853-RA | 63..917 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18121434..18121927 | 510..17 | 2470 | 100 | Minus |
| 3L | 28110227 | 3L | 18121016..18121379 | 871..508 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:58:12 has no hits.
BS26318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:00 Download gff for
BS26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42853-RA | 63..906 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:25 Download gff for
BS26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42853-RA | 63..906 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:54 Download gff for
BS26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42853-RA | 63..906 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:54 Download gff for
BS26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18121027..18121377 | 510..860 | 100 | <- | Minus |
| 3L | 18121435..18121927 | 17..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:25 Download gff for
BS26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18114127..18114477 | 510..860 | 100 | <- | Minus |
| arm_3L | 18114535..18115027 | 17..509 | 100 | | Minus |
BS26318.pep Sequence
Translation from 16 to 870
> BS26318.pep
MATSANSVQVSGAGAEVNEAKLICIWEGITELILWRNWIKSMLVFVMLQT
IIYDLLSEPLVFVVSVWALIIMVISMGYRFLVQYTNTHIQNNSYPKYLDI
DLRISQELSKQLGVLVSTKVVAFLNNLREILLVKSFSKSFKWFGLLLIIS
KLGKQINFLIVGQLGLFLLFTIPKMCEMNRRSSNIVQLPKFNKQYQITKV
NASTETQNALDMESLKECNEDTIKLIEKQPEGMDLSLGCDITKESQNAAD
DLKAFKVKEEIDIDAFERLADSWSDEDTLTDQKN*
BS26318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42853-PA | 284 | CG42853-PA | 1..284 | 1..284 | 1433 | 100 | Plus |
| Rtnl2-PC | 255 | CG1279-PC | 15..226 | 25..240 | 182 | 25.9 | Plus |
| Rtnl2-PB | 255 | CG1279-PB | 15..226 | 25..240 | 182 | 25.9 | Plus |
| Rtnl1-PL | 222 | CG33113-PL | 7..182 | 11..182 | 150 | 25 | Plus |
| Rtnl1-PG | 224 | CG33113-PG | 26..184 | 27..182 | 146 | 25.2 | Plus |
