BS26320.complete Sequence
434 bp assembled on 2011-09-14
GenBank Submission: KX801588
> BS26320.complete
GAAGTTATCAGTCGACATGAATATCTTTATCTCCTTAATATTGGTAGTGC
TGGCCATTTTATCTTTTGCTGACCACACCGTGGCAGACGGAGATCGGCAC
CTAAATGAGGACTTAAATCGAGCGACGGTAAAGAAGACTAAGTATGGTTG
GCAATGTGCCGGGGTGACGTGCCCCATAAAGTTTACGGCATCTTGTAAGG
TAACAAAGGTCCTAAAGCCCTCTGATCTACAGCACACTGAGCTCCTGATT
TTGTGCATGGATAAAAACGATAAGCCTATGTGTGGGATAACACGAACTCG
AAAAGGGGTAATACAGGAAGTTCTGGACGTGGATGAAAACGGAAATACGA
TATATGACAAAAAGGAAGTTATTTCGGAGAACGATGGTACTAAAATCCCT
AGGTGCCCACGAAAGTAAAAGCTTTCTAGACCAT
BS26320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-RA | 402 | CG42607-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
| Sfp78E-RB | 453 | CG42607-PB | 117..453 | 82..418 | 1685 | 100 | Plus |
| Sfp78E-RB | 453 | CG42607-PB | 1..67 | 17..83 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-RA | 778 | CG42607-RA | 147..549 | 17..419 | 2015 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 239..576 | 82..419 | 1690 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 123..189 | 17..83 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21683327..21683602 | 419..144 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 21683776..21683842 | 83..17 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 21683665..21683726 | 143..82 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:30:17 has no hits.
BS26320.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:40 Download gff for
BS26320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 147..546 | 17..416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:43 Download gff for
BS26320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 147..546 | 17..416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:03 Download gff for
BS26320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 147..546 | 17..416 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:03 Download gff for
BS26320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21683330..21683602 | 144..416 | 100 | <- | Minus |
| 3L | 21683665..21683725 | 83..143 | 100 | <- | Minus |
| 3L | 21683777..21683842 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:43 Download gff for
BS26320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21676430..21676702 | 144..416 | 100 | <- | Minus |
| arm_3L | 21676765..21676825 | 83..143 | 100 | <- | Minus |
| arm_3L | 21676877..21676942 | 17..82 | 100 | | Minus |
BS26320.pep Sequence
Translation from 16 to 417
> BS26320.pep
MNIFISLILVVLAILSFADHTVADGDRHLNEDLNRATVKKTKYGWQCAGV
TCPIKFTASCKVTKVLKPSDLQHTELLILCMDKNDKPMCGITRTRKGVIQ
EVLDVDENGNTIYDKKEVISENDGTKIPRCPRK*
BS26320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-PA | 133 | CG42607-PA | 1..133 | 1..133 | 701 | 100 | Plus |
| Sfp78E-PB | 150 | CG42607-PB | 1..150 | 1..133 | 673 | 88.7 | Plus |
