Clone BS26329 Report

Search the DGRC for BS26329

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:263
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG43093-RA
Protein status:BS26329.pep: gold
Sequenced Size:398

Clone Sequence Records

BS26329.complete Sequence

398 bp assembled on 2011-08-24

GenBank Submission: KX804465

> BS26329.complete
GAAGTTATCAGTCGACATGCAGCTGAGTATTATAGTATTGCTCTTGTGCT
CGGTGGTTGTTGCAAATTCACTTGCCCCAAGTCAACTGGCATCGAAAACC
CCATCACCCAATGTAAGCAAGGATCAGCCGTCATCCAGGGAGGAGAAACC
CAGTTTGAAACCGTGCAAACCCATCGAGACTGTGAGTTCAGAGCCAAAAG
GACTAGGCAATACTCCTAAAGTCGGTTCAATTACTCCGGAATCAGCTAAA
ACGTCTGGCACAACCGTGGATAAAAGTCTGGATGATTGCGAACCCATTCC
CGAGGGTATTGGATCTCGATTGAATGCGAGAACTCTTCAAACACTGGTTA
TAAAAAATAATAATAACCCTCTTTTTAATTGAAAGCTTTCTAGACCAT

BS26329.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-RA 366 CG43093-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-RA 476 CG43093-RA 4..369 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22769882..22770235 382..29 1770 100 Minus
Blast to na_te.dros performed 2014-11-26 21:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 5929..5965 329..365 113 78.4 Plus
invader6 4885 invader6 INVADER6 4885bp 4388..4429 353..394 102 71.4 Plus

BS26329.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:04 Download gff for BS26329.complete
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 4..368 17..381 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:40 Download gff for BS26329.complete
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 4..368 17..381 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:54 Download gff for BS26329.complete
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 4..368 17..381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:54 Download gff for BS26329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22769883..22770235 29..381 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:40 Download gff for BS26329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18595605..18595957 29..381 100 <- Minus

BS26329.pep Sequence

Translation from 16 to 381

> BS26329.pep
MQLSIIVLLLCSVVVANSLAPSQLASKTPSPNVSKDQPSSREEKPSLKPC
KPIETVSSEPKGLGNTPKVGSITPESAKTSGTTVDKSLDDCEPIPEGIGS
RLNARTLQTLVIKNNNNPLFN*

BS26329.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-PA 121 CG43093-PA 1..121 1..121 612 100 Plus