Clone BS26340 Report

Search the DGRC for BS26340

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:263
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG42876-RA
Protein status:BS26340.pep: gold
Sequenced Size:835

Clone Sequence Records

BS26340.complete Sequence

835 bp assembled on 2011-08-24

GenBank Submission: KX805190

> BS26340.complete
GAAGTTATCAGTCGACATGTCGGTGCAATGGAAAATTGTCATAATGAGCT
TCTTTCTGTTCAGTACCGCGCACGCTGGAGGATATTGTGGACCCAACAAG
ATATATGCGTGTGTGCCTACGCTATTTTGTAAAGATGGTCGCAGCACGCA
AAGAAATCCCGCTGCTCACTTCAACAGGCAGTGCTTTTCGTTTGAATCTT
GCTGTGACGTTAATAGGGTAATTTATGGAATGCGGTACACTGGAGGAGAT
TTCGAGCCAGGTCCATACGAACAAATCAGCGAGCCATTCAACAATGCTAG
TGGAAAAACTTCTGGCACAAACAGTCAACAGTCAACTGGTAATACGGGTG
GCACTAGTCCGACCTTGAAAAAAAAGGGCGGAGTGTCATCTATAACGAAC
ATTCAAAATACTAATAATGGCGGAGGCAAAAATTTTACAACAAATAGTCA
AATGCCGAGTTATACGATGAAAAGTCAGCCATCCAATAACGCAGGTGGAA
AAACCACTACTGCAAACAATCAGGCACCCAGTGACTCAGATGGAAAAACT
TTTACACACAGTACAAATTTACATGCTCATAGTTATCTTAACAATAATTC
CGGAAAAACTAACTTAGGAAACCCATCTACGGCTAATACTAAAAATACAA
AAAGTCCAAATTATCATCATTATCAAAATCATAATTACAATCCCAGTGGC
AATTTGGGCAGGGATGTTGGAGTTCATAGACTATCTTCAAACATTTAAAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGGGGCGAGGTAAGTGGTCAAT
AATCTATAATCCATAAATTCTATTAAATTTCCAAT

BS26340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42876-RA 732 CG42876-PA 1..732 17..748 3660 100 Plus
CG42876-RB 732 CG42876-PB 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42876-RA 1104 CG42876-RA 11..743 16..748 3665 100 Plus
CG42876-RB 1513 CG42876-RB 11..743 16..748 3665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15811341..15811872 748..217 2660 100 Minus
2L 23513712 2L 15811928..15812131 219..16 1020 100 Minus
Blast to na_te.dros performed 2014-11-26 21:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
looper1 1881 looper1 LOOPER1_DM 1881bp 1054..1140 547..631 124 65.2 Plus

BS26340.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:08 Download gff for BS26340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42876-RA 12..743 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:55 Download gff for BS26340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42876-RB 12..743 17..748 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:13 Download gff for BS26340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42876-RB 12..743 17..748 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:13 Download gff for BS26340.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15811930..15812130 17..217 100   Minus
2L 15811341..15811871 218..748 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:55 Download gff for BS26340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15811341..15811871 218..748 100 <- Minus
arm_2L 15811930..15812130 17..217 100   Minus

BS26340.pep Sequence

Translation from 16 to 747

> BS26340.pep
MSVQWKIVIMSFFLFSTAHAGGYCGPNKIYACVPTLFCKDGRSTQRNPAA
HFNRQCFSFESCCDVNRVIYGMRYTGGDFEPGPYEQISEPFNNASGKTSG
TNSQQSTGNTGGTSPTLKKKGGVSSITNIQNTNNGGGKNFTTNSQMPSYT
MKSQPSNNAGGKTTTANNQAPSDSDGKTFTHSTNLHAHSYLNNNSGKTNL
GNPSTANTKNTKSPNYHHYQNHNYNPSGNLGRDVGVHRLSSNI*

BS26340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42876-PA 243 CG42876-PA 1..243 1..243 1330 100 Plus
CG42876-PB 243 CG42876-PB 1..243 1..243 1330 100 Plus