BS26341.complete Sequence
857 bp assembled on 2011-08-24
GenBank Submission: KX804967
> BS26341.complete
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGATAATGATAACGATAGTGATCCCGCTAACCCACTAAAAGCTTTCT
AGACCAT
BS26341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glycogenin-RH | 1005 | CG44244-PH | 1..789 | 17..805 | 3945 | 100 | Plus |
| Glycogenin-RG | 1071 | CG44244-PG | 1..789 | 17..805 | 3945 | 100 | Plus |
| Glycogenin-RD | 1638 | CG44244-PD | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glycogenin-RH | 2010 | CG44244-RH | 170..958 | 17..805 | 3945 | 100 | Plus |
| Glycogenin-RG | 2447 | CG44244-RG | 170..958 | 17..805 | 3945 | 100 | Plus |
| Glycogenin-RD | 3014 | CG44244-RD | 170..958 | 17..805 | 3945 | 100 | Plus |
| Glycogenin-RH | 2010 | CG44244-RH | 1371..1407 | 805..841 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21204613..21204925 | 24..336 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 21205009..21205301 | 334..626 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 21205361..21205545 | 625..809 | 910 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21210182..21210218 | 805..841 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:38:06 has no hits.
BS26341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:09 Download gff for
BS26341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RC | 179..1001 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:05 Download gff for
BS26341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RD | 170..958 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:21 Download gff for
BS26341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RD | 170..958 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:21 Download gff for
BS26341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21205361..21205541 | 625..805 | 100 | -> | Plus |
| 2R | 21210183..21210216 | 806..839 | 100 | | Plus |
| 2R | 21204609..21204923 | 17..334 | 99 | -> | Plus |
| 2R | 21205010..21205299 | 335..624 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:05 Download gff for
BS26341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17092866..17093046 | 625..805 | 100 | -> | Plus |
| arm_2R | 17097688..17097721 | 806..839 | 100 | | Plus |
| arm_2R | 17092114..17092428 | 17..334 | 99 | -> | Plus |
| arm_2R | 17092515..17092804 | 335..624 | 100 | -> | Plus |
BS26341.pep Sequence
Translation from 16 to 840
> BS26341.pep
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMIMITIVIPLTH*
BS26341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glycogenin-PD | 545 | CG44244-PD | 1..270 | 1..270 | 1383 | 97.8 | Plus |
| Glycogenin-PB | 333 | CG44244-PB | 1..263 | 1..263 | 1380 | 100 | Plus |
| Glycogenin-PH | 334 | CG44244-PH | 1..263 | 1..263 | 1380 | 100 | Plus |
| Glycogenin-PG | 356 | CG44244-PG | 1..263 | 1..263 | 1380 | 100 | Plus |
| Glycogenin-PE | 699 | CG44244-PE | 1..263 | 1..263 | 1380 | 100 | Plus |
