BS26347.complete Sequence
284 bp assembled on 2011-08-24
GenBank Submission: KX805330
> BS26347.complete
GAAGTTATCAGTCGACATGTGCAACGCCATTTGTGAATGCCTTAAATGTC
CTGGCAAAGTTATTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTG
AGCATCGTGTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGT
CTACTTCACGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGA
AGCAGGTCGCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTAC
TTCAACAAGGAGTACTGAAAGCTTTCTAGACCAT
BS26347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mex1-RB | 252 | CG7936-PB | 1..252 | 17..268 | 1260 | 100 | Plus |
| mex1-RC | 252 | CG7936-PC | 1..252 | 17..268 | 1155 | 97.2 | Plus |
| mex1-RA | 252 | CG7936-PA | 1..252 | 17..268 | 1155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mex1-RB | 741 | CG7936-RB | 83..335 | 16..268 | 1265 | 100 | Plus |
| mex1-RC | 1034 | CG7936-RC | 425..677 | 16..268 | 1160 | 97.2 | Plus |
| mex1-RA | 710 | CG7936-RA | 101..353 | 16..268 | 1160 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15517830..15518034 | 268..64 | 1010 | 99.5 | Minus |
| 3L | 28110227 | 3L | 15519457..15519510 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 138..64 | 111 | 62.7 | Minus |
BS26347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:07 Download gff for
BS26347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mex1-RB | 84..334 | 17..267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:28 Download gff for
BS26347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mex1-RB | 84..334 | 17..267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:43 Download gff for
BS26347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mex1-RB | 84..334 | 17..267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:43 Download gff for
BS26347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15517831..15518028 | 70..267 | 100 | <- | Minus |
| 3L | 15519457..15519509 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:28 Download gff for
BS26347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15510931..15511128 | 70..267 | 100 | <- | Minus |
| arm_3L | 15512557..15512609 | 17..69 | 100 | | Minus |
BS26347.pep Sequence
Translation from 16 to 267
> BS26347.pep
MCNAICECLKCPGKVICCCCSCACKMLLSIVFSALLMVVVIGLIVYFTVF
YHKDKNTDEVQKQVAQLTPIVKRSIRDYFNKEY*
BS26347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mex1-PB | 83 | CG7936-PB | 1..83 | 1..83 | 450 | 100 | Plus |
| mex1-PC | 83 | CG7936-PC | 1..83 | 1..83 | 447 | 97.6 | Plus |
| mex1-PA | 83 | CG7936-PA | 1..83 | 1..83 | 447 | 97.6 | Plus |
| CG42394-PC | 77 | CG42394-PC | 1..75 | 5..81 | 147 | 36.4 | Plus |
| CG42394-PB | 77 | CG42394-PB | 1..75 | 5..81 | 147 | 36.4 | Plus |
