Clone BS26354 Report

Search the DGRC for BS26354

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:263
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG43120-RA
Protein status:BS26354.pep: gold
Sequenced Size:893

Clone Sequence Records

BS26354.complete Sequence

893 bp assembled on 2011-08-24

GenBank Submission: KX803492

> BS26354.complete
GAAGTTATCAGTCGACATGAGCACCTCACTAAGATCCAGCCGAGGAATCA
AGCTTATGAAGTCGGGCCATTTCTCAGATGTATGCATTCGCATAGATTGT
ATTAGCTTCCGGTGCCACAAAATCATCTTAGCCTGTGCTTCTGAGTTTTT
TGAGAGATTATTTCAAGAAGATTCGGAGGAATTTTTGTTAGATGGAACAA
CCCCAGAAGTTTTTCAGATATTTCTTGATTTTATATACGCTCCTAACGAT
GACCAATTCGGCAATCTTGAACCGGATGTATTGATGTGTCTTCTGAAGTG
CGCAAATATGTGGCTCGCTGTGGAAATAGAAGAAAGATGCATCGACATTC
TATTAGATCTATCCCCTGACATGGATCCGGATGCCCTTATTGCACTTTTT
GCAGTGTCGCATTGTGTGGATCACAAAGTATTAATGGAACAGTCTATTGG
AGTCCTGCAACATATATGGAGAAACGAAATGGACTGTCCATCAACTGTCA
GAATGGAAGTCGACTGCTTCGGAGAATATTTTAAAAACACCTCGGGAATG
CTTTCTCCGCGTAGGCGCTTTGTCATGGTGGAAAACTGGATAAAAGGCAA
TGATTTGAATAATAGACCGTGCTCTCAAAAAGATAAAATTAACCAAATTA
TTAAGAGCATTAACTTTTTGGAAATGTCATTGGAGGACTTTTACAATGGT
CCAGGAAAGTCTAACGTTTTGCCCGATTCAGACAAGTTCGAAATAATGTA
TAAACTTGCCCGTTCAAATAATGAATGGACTGTTATATTGGACGAAAGGG
ATCGAGATAGGTACTACATAATTGTTTTTGTGAAGAAGAAGTCGACTAAA
TTTGTGTTTTATTTAAAGTTGATATAAAAGCTTTCTAGACCAT

BS26354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG43120-RA 861 CG43120-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG43120-RA 1270 CG43120-RA 53..913 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14382517..14382942 452..877 2130 100 Plus
3L 28110227 3L 14382048..14382469 32..453 2110 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:42:09 has no hits.

BS26354.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:16 Download gff for BS26354.complete
Subject Subject Range Query Range Percent Splice Strand
CG43120-RA 53..911 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:11 Download gff for BS26354.complete
Subject Subject Range Query Range Percent Splice Strand
CG43120-RA 53..911 17..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:01 Download gff for BS26354.complete
Subject Subject Range Query Range Percent Splice Strand
CG43120-RA 53..911 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:01 Download gff for BS26354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14381965..14381981 17..33 100 -> Plus
3L 14382050..14382467 34..451 100 -> Plus
3L 14382517..14382940 452..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:11 Download gff for BS26354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14375065..14375081 17..33 100 -> Plus
arm_3L 14375150..14375567 34..451 100 -> Plus
arm_3L 14375617..14376040 452..875 100   Plus

BS26354.pep Sequence

Translation from 16 to 876

> BS26354.pep
MSTSLRSSRGIKLMKSGHFSDVCIRIDCISFRCHKIILACASEFFERLFQ
EDSEEFLLDGTTPEVFQIFLDFIYAPNDDQFGNLEPDVLMCLLKCANMWL
AVEIEERCIDILLDLSPDMDPDALIALFAVSHCVDHKVLMEQSIGVLQHI
WRNEMDCPSTVRMEVDCFGEYFKNTSGMLSPRRRFVMVENWIKGNDLNNR
PCSQKDKINQIIKSINFLEMSLEDFYNGPGKSNVLPDSDKFEIMYKLARS
NNEWTVILDERDRDRYYIIVFVKKKSTKFVFYLKLI*

BS26354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG43120-PA 286 CG43120-PA 1..286 1..286 1516 100 Plus
CG11714-PC 371 CG11714-PC 31..304 30..250 246 24.5 Plus
CG11714-PD 383 CG11714-PD 43..316 30..250 246 24.5 Plus
CG11714-PA 383 CG11714-PA 43..316 30..250 246 24.5 Plus