BS26357.complete Sequence
3929 bp assembled on 2011-10-14
GenBank Submission: KX802665
> BS26357.complete
GAAGTTATCAGTCGACATGTGTTTGTTTTACAATCGTCGCCTCTTTGTGA
TTCAATTGATTGAGATCCTACTGCTGCTGCTAACCGACCACAATGGACGA
CTGACACTAACCAAGGAGTCGACAACAGTTGCTGCCGCCGTCGCCCAACC
GAAGAACTCAACAGCACTCCAGCCATATCTGCAGATCCAGAAGCACGCCG
TCACAAGACTGACCATCAGCAAGCCCCACTCCCCGTACTATTTGCCATGC
ATACCCATCCTAACGCCCTACAATCACGATCAGGACAACCAGCCCATCTA
CTGCAGTTGGTATCGAAATGACGTGGTTGTCGAACAAGTATCATATCGCA
AAAATGACTTCTTTATCTATGACAATGGTACGCTGCGTCTGCCCACCAAT
GAAAAGGCAAGCGGCGAATATTACTGCAAGATCGAGTGGGATGAGTCAGC
GGTGATATCCGACAGAATCACAGTCGAGTATCCTGTGCTCAAGCGTTTAT
TTCCTGGCCAACAGCAAGCGGCCAATATCAGTGCGTTGGAAAACAAACCG
CTCGTGCTGAGCTGCCCCTTTCTGAGTGTTCCAGCTGCGCGTTTTAGCTG
GTACTTTGGCAACGATTCCCTGACCAATGACAACAGTGCTCTCATCCTGA
CCAATGGCACCTTAATATTGAGGCATTTGCGTCTCGAACAGGCGGGTAAA
TATAAGTGCGTGGCGCAGAACACATTTGCCAGCAAGACGCACCGCCAGTT
CATTTGGCAACTGCAAGTGGAGCCGAAGGATGCTACATTTTATCCCAAAA
ACGAGGCGGGAATTACGGAGACAGCCGTTTCGGAGGCCCAACTACTGCCG
GCGTTTCAGAATGCAACGGTTTTTGTGCCCGCCGGCGGATCCGTGCTGCT
ACAATGCCACGCGGTGGCAGACTTTGTGCCAATTGTGTGGTACCTCCAGC
CGCCAAACAACAAGATGGTTCGCCTGAGCAACAATAGTGTAGCCTATTCC
ATCACGAATGCTAGCATAGCCCGGCATGAAGGACGCTACAGTTGTATAAC
CCCACTGGAAACGCAAAACTTTCAGGTGATTGTGACAACACCTCCGAGGA
TTGTGAGTCGCCTGCCCGTCGAGGTGGTGTATATTGGTCTCTCGCGAACA
CTAACCTGCCGGGCAGAGGGGCATCCGGAACCGAGTATTACCTGGTACCA
CAACGGCGTCCATCTGAACAGCTCATATACACGCTACATTAGCGGGAATG
AGTTGCACGTCCATTCGTTTGACTCCAAGGAGGAGGGCATCTACCAGTGT
GTGGCCAGAAATGTTGCTGGTGAGGATTCGGCGACGGGTGAGCTGCGATT
CAACCGACAGCTCGAGGAGGTCAACCCACTGCAGAACATACGCTGCTATC
CGCACAGCTTCCATTCGATCAACATCACATTTGACAGCCGCACCCTAACG
TCAATGTTCGTGGTGTATATTGTGAGGAACAATCCCCACAGTTGGACCTC
GTTTTCGCCCATGAAGCTGAATCAGACATCCTACGTGGTGATATCCACTG
ATTTGCCCGTTTACGAGCCCTTTGCCTTGATCACCCGAGTATTATTTCCC
ACTACAGAGGTAAGGACAGGAACCTTGGTTCCCCAGCAAATGATTCTCAG
CTCGTTAAGAAGTACACCAGTCACGTGCTGCACCCAAGGATTAATGCTTC
GACCCATTGCCGTGGGCAATGACACGTTTGTTAAGTGGTCGCAGGGTCAG
TTGGAGAACAAGAAGTACTTTATCCTGCAGTTCTCGATCAACCACACCCA
TCCGCATCCTGCGCAACTCTTAAATGGATCTCTACAAGGCACCCTGACTT
CTGTTGAGGAAAAAGCTGACCAGGTGCGACACCATCTGACCGAAATCCAG
CCTCTTAATCAATCTGCGGCAGCCACAGTGCTGAGAAATGTGGAGCACGA
GGACAACGTTGTCGACGACACTCTAGAACTGGAGGATGACATCTTTAGTC
TAGTGGTAGATGCCAGTGTAACCGGAATCTTGTTGCAGCGATTCACGCGC
ATCAAAATGAGAGTGTTGATCATCACCACCGAGAATGAGTTCCTGGGCCA
GGACTTTCGCTATGTTCAGTGGAAGATTATCGAGAATGGCACTTCGGAGC
AGTCAAATATGCCCTTTCGTCTGGTCACCCGTGAGTCTCGGGCTTTGGCC
TTTAAGTTTCTGGATAGCCTCAATGAGACTTGCGTGCTGGAGTGCCACAC
GGAGATACAAGCACAAATGTCATTACCCAGTCAGGATCCAAAGTGTCAGG
ATCGAAATATTGCCAACTCGTTGCTGTTGGTCACAGGTCTTAAGCCAGAC
ACTCGGTACAATCTGCATTTCTACAACTGCAAGACGCGTATTTTCTATGG
CGACATAGATGAGAAGACCGAGCAGGATCCTCCTGGTACCATCAGCAATT
CAAAGTTGATTAAACAAAATGGCCTGAAATTGATGTGGGAGCCACCGATT
AATCCCAATGGTCGTGTTCATCACTATGATATCCGGTGGTCGTTGGACAA
TGTAACGCACGAAGCTATTGTTAAAGAGTGCACAAAATGCTCATATAAGT
TTCCAAATGTCTCTGAGACGGCGAAAATCCATGTGGCAGTTCGCGTAATG
GGCGATACTGGAGCAGGAGCTCCCATGTACTTCGACATGATAAATAATAA
CCACACATGGCTGAAGGAGGAAAGCGAATCATCGCATTCGGAGGTTTACA
GTGGGATTGCCATAGGCTCTTTGCTGTCAATAGCATGTGTCTTTCTCTTC
GGGCTGTTTATAATTTTCCAGCAGCGCAACTTCAAGGCCCGCGCCCAGGG
ACCCACCCACCTGACCACACCGACTGATATTAATTTCGGTAATCTGAGCA
GTGCCTCCGGGATGCCGGGAGATAGTGCCGGCGGTCTGAGTGGTGGAACA
TTGCAGCAGGATTGCCATGAGATGCAAACTCTCATTCCGCGTTCACGGTA
CCACATTGAATTGCTACCGGAGCACAGTTTGGAATACCAGACCAGCACGG
CGGCCGTGGCAGTTGTTCATCTGGCCAACGGCAATGGGAGTGTCCAGGTG
GCGAGGCGATCGGATCAAGATGGAGCAGCTCAGGGGGACTTGGGCATAGC
CGGAGTGCACAACCTATCGCAGTTGCCGCTGTGCGGAGTTGGAGGTACAT
CGCCGGAGCGAAAGACCGTGCAGGATGCCATGTTGCAGGAAGCGAAAGCA
TTCTATATACCCTATAGGCATACGCCACCCAACGCGGTGGCTTTGAGCAG
CTCCAAACAGTGTGCGGTGCCCAGTGGCTCCGAACTGGAGGTGATTGTAC
CGCCAAACTCGCTGCCATTGGTCACCACTATGCCTGGACTGGGTGTGGTC
GGCGGCGGCGGCAGCGGAGGTGGAGGTGTAGGTGGCTCCAGTCGAAGGAG
TGGGAGCCTGAGCAGCAGCAGTGCCAGCAGCAGCAGCAACGGCAGCAGTA
AAAAACAGTTTCACACCAACTTCGTGCGCCACTCAAATTCAAATGATGGG
ATTTACCTGCTGGCCGAGGAGGAGGCGGCTGCCACCTTAACACCCACCTC
GGAACGCGAATATGCGGCTGTATGCCTCACCAATGGTTTCAAACTGCCCG
CCGATGTGGCCAAATCGGGGGGCGGCACGTATAACACCACCAACAATAAC
AATAGCAGCACTAACACTAGCCAGAAATCAGCAACTGCCAAGGAGCGTCA
GCCGCGAGGCAATGGCAATCCGATCTCGTTCAGCCACAATGCATGCAAAG
TTCCTGCCAACGGACCGGCGTCCGTTAACGTAAACCATTCGTCGGCGGTC
AAGCAATCTTGGCCAGCGGCGACAGTGGTCCATCGACGAGCCCAGGTGGA
TCCCAATGGGTGAAAGCTTTCTAGACCAT
BS26357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plum-RD | 3897 | CG6490-PD | 1..3897 | 17..3913 | 19485 | 100 | Plus |
| plum-RC | 3897 | CG6490-PC | 1..3897 | 17..3913 | 19485 | 100 | Plus |
| plum-RB | 3897 | CG6490-PB | 1..3897 | 17..3913 | 19485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plum-RD | 7490 | CG6490-RD | 693..4590 | 17..3914 | 19490 | 100 | Plus |
| plum-RC | 6030 | CG6490-RC | 258..4155 | 17..3914 | 19490 | 100 | Plus |
| plum-RB | 6181 | CG6490-RB | 409..4306 | 17..3914 | 19490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26472978..26474294 | 3914..2598 | 6585 | 100 | Minus |
| 3R | 32079331 | 3R | 26475473..26476458 | 1691..706 | 4930 | 100 | Minus |
| 3R | 32079331 | 3R | 26474973..26475409 | 2128..1692 | 2185 | 100 | Minus |
| 3R | 32079331 | 3R | 26474574..26474874 | 2429..2129 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 26477382..26477583 | 485..284 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 26474348..26474517 | 2599..2430 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 26477649..26477807 | 284..126 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 26477150..26477301 | 636..485 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 26532113..26532224 | 128..17 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26476920..26476994 | 708..634 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:55:59 has no hits.
BS26357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:35 Download gff for
BS26357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6490-RD | 706..4588 | 30..3912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:13 Download gff for
BS26357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6490-RB | 422..4304 | 30..3912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:11 Download gff for
BS26357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plum-RB | 422..4304 | 30..3912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:11 Download gff for
BS26357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26477150..26477300 | 486..636 | 100 | <- | Minus |
| 3R | 26477382..26477582 | 285..485 | 100 | <- | Minus |
| 3R | 26477649..26477804 | 129..284 | 100 | <- | Minus |
| 3R | 26532113..26532211 | 30..128 | 100 | | Minus |
| 3R | 26472980..26474292 | 2600..3912 | 100 | <- | Minus |
| 3R | 26474348..26474517 | 2430..2599 | 100 | <- | Minus |
| 3R | 26474574..26474874 | 2129..2429 | 100 | <- | Minus |
| 3R | 26474973..26475409 | 1692..2128 | 100 | <- | Minus |
| 3R | 26475473..26476458 | 706..1691 | 100 | <- | Minus |
| 3R | 26476923..26476991 | 637..705 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:13 Download gff for
BS26357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22357835..22357933 | 30..128 | 100 | | Minus |
| arm_3R | 22298702..22300014 | 2600..3912 | 100 | <- | Minus |
| arm_3R | 22300070..22300239 | 2430..2599 | 100 | <- | Minus |
| arm_3R | 22300296..22300596 | 2129..2429 | 100 | <- | Minus |
| arm_3R | 22300695..22301131 | 1692..2128 | 100 | <- | Minus |
| arm_3R | 22301195..22302180 | 706..1691 | 100 | <- | Minus |
| arm_3R | 22302645..22302713 | 637..705 | 100 | <- | Minus |
| arm_3R | 22302872..22303022 | 486..636 | 100 | <- | Minus |
| arm_3R | 22303104..22303304 | 285..485 | 100 | <- | Minus |
| arm_3R | 22303371..22303526 | 129..284 | 100 | <- | Minus |
BS26357.pep Sequence
Translation from 16 to 3912
> BS26357.pep
MCLFYNRRLFVIQLIEILLLLLTDHNGRLTLTKESTTVAAAVAQPKNSTA
LQPYLQIQKHAVTRLTISKPHSPYYLPCIPILTPYNHDQDNQPIYCSWYR
NDVVVEQVSYRKNDFFIYDNGTLRLPTNEKASGEYYCKIEWDESAVISDR
ITVEYPVLKRLFPGQQQAANISALENKPLVLSCPFLSVPAARFSWYFGND
SLTNDNSALILTNGTLILRHLRLEQAGKYKCVAQNTFASKTHRQFIWQLQ
VEPKDATFYPKNEAGITETAVSEAQLLPAFQNATVFVPAGGSVLLQCHAV
ADFVPIVWYLQPPNNKMVRLSNNSVAYSITNASIARHEGRYSCITPLETQ
NFQVIVTTPPRIVSRLPVEVVYIGLSRTLTCRAEGHPEPSITWYHNGVHL
NSSYTRYISGNELHVHSFDSKEEGIYQCVARNVAGEDSATGELRFNRQLE
EVNPLQNIRCYPHSFHSINITFDSRTLTSMFVVYIVRNNPHSWTSFSPMK
LNQTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSSLRST
PVTCCTQGLMLRPIAVGNDTFVKWSQGQLENKKYFILQFSINHTHPHPAQ
LLNGSLQGTLTSVEEKADQVRHHLTEIQPLNQSAAATVLRNVEHEDNVVD
DTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLGQDFRYV
QWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLECHTEIQAQ
MSLPSQDPKCQDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEK
TEQDPPGTISNSKLIKQNGLKLMWEPPINPNGRVHHYDIRWSLDNVTHEA
IVKECTKCSYKFPNVSETAKIHVAVRVMGDTGAGAPMYFDMINNNHTWLK
EESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNFKARAQGPTHLT
TPTDINFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIELL
PEHSLEYQTSTAAVAVVHLANGNGSVQVARRSDQDGAAQGDLGIAGVHNL
SQLPLCGVGGTSPERKTVQDAMLQEAKAFYIPYRHTPPNAVALSSSKQCA
VPSGSELEVIVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRRSGSLSS
SSASSSSNGSSKKQFHTNFVRHSNSNDGIYLLAEEEAAATLTPTSEREYA
AVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKSATAKERQPRGNG
NPISFSHNACKVPANGPASVNVNHSSAVKQSWPAATVVHRRAQVDPNG*
BS26357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plum-PD | 1298 | CG6490-PD | 1..1298 | 1..1298 | 6799 | 100 | Plus |
| plum-PC | 1298 | CG6490-PC | 1..1298 | 1..1298 | 6799 | 100 | Plus |
| plum-PB | 1298 | CG6490-PB | 1..1298 | 1..1298 | 6799 | 100 | Plus |
| plum-PE | 1298 | CG6490-PE | 1..1298 | 1..1298 | 6799 | 100 | Plus |
| ihog-PA | 886 | CG9211-PA | 118..444 | 123..451 | 198 | 27.3 | Plus |
