Clone BS26359 Report

Search the DGRC for BS26359

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:263
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG1308-RE
Protein status:BS26359.pep: full length peptide match
Sequenced Size:800

Clone Sequence Records

BS26359.complete Sequence

800 bp assembled on 2011-08-24

GenBank Submission: KX801082

> BS26359.complete
GAAGTTATCAGTCGACATGGACAATAAGAAGGATATATACAATCTGTGGG
TGCAGTACACGACAAAGAATGATGAAACCCACTTCCGGCAATTTGTGGCC
CGCTTCGTGGCCATTTGGAGGAGCCAACTGCAGCTAGACTTTCAGGCGGA
AAATTGCCCGATGTGGCACGAGGTTCAGCCGGATAGTGGTCCCCACTTGG
GCCGCCTCCCGGATGAACTCCTGCCCGCCATCGGTAAATTCATCATTGTA
GCCAGAGATGTTTGCGAAACGGAAGGGAAACTGGAGGAGCAGGCCATTGA
AGAAGTAGCCATACTCGTGGATTGTCTGGTGATCGTGTGCCGGCACTTTG
ATAACATACTGTCCATCATCAAGTATGAATACAAGCCGAATTTGATCGCC
ATACTCTCCAGGGTGTTCAAACAACAAATGGAGCTGCCGCAGAGCGTGCC
CGCAATAAGCCACCTGTTTAGCAGTTTCTCGGCATTCCTGGAAGTCATGT
ATGATCCATATCTGACGTGGCGCAGCTTCGTGCGAGGCCAGTCAGCTGAC
TACAGTCGTCTTTCATATAAACCCCACTCGGTTCATGTGGAAATTGTCCC
CTTTATTTATGATTGCTTTCAGGAGGAGAAGCTCATCCGATATGCGGAAA
TTGGCGAAAGCCTGCTAAACATCCTGGGCGCTGTGATTTGCGGCTCACAG
GTAGCGCCAGAAAGCGTCTCCAGTCCCTTCCTGTGTAGTCCTTTCTCTCT
TAAAAACCGTTTAATTATTAACCTCACTTCCTGAAAGCTTTCTAGACCAT

BS26359.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RD 8139 CG43367-PD 1..684 17..700 3420 100 Plus
CG43367-RC 8265 CG43367-PC 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RE 10170 CG43367-RE 293..1066 17..790 3855 99.9 Plus
CG43367-RF 9817 CG43367-RF 1..713 78..790 3550 99.9 Plus
CG43367-RD 9842 CG43367-RD 293..976 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4194555..4194914 65..424 1800 100 Plus
3L 28110227 3L 4194978..4195164 425..611 935 100 Plus
3L 28110227 3L 4195298..4195477 611..790 885 99.4 Plus
3L 28110227 3L 4194285..4194335 17..67 255 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:39:43 has no hits.

BS26359.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:12 Download gff for BS26359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1308-RE 293..1059 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:54 Download gff for BS26359.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RE 293..1059 17..783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:56 Download gff for BS26359.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RE 293..1059 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:56 Download gff for BS26359.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4194285..4194335 17..67 100 -> Plus
3L 4194558..4194914 68..424 100 -> Plus
3L 4194978..4195164 425..611 100 -> Plus
3L 4195299..4195470 612..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:54 Download gff for BS26359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4195299..4195470 612..783 100   Plus
arm_3L 4194558..4194914 68..424 100 -> Plus
arm_3L 4194285..4194335 17..67 100 -> Plus
arm_3L 4194978..4195164 425..611 100 -> Plus

BS26359.pep Sequence

Translation from 16 to 783

> BS26359.pep
MDNKKDIYNLWVQYTTKNDETHFRQFVARFVAIWRSQLQLDFQAENCPMW
HEVQPDSGPHLGRLPDELLPAIGKFIIVARDVCETEGKLEEQAIEEVAIL
VDCLVIVCRHFDNILSIIKYEYKPNLIAILSRVFKQQMELPQSVPAISHL
FSSFSAFLEVMYDPYLTWRSFVRGQSADYSRLSYKPHSVHVEIVPFIYDC
FQEEKLIRYAEIGESLLNILGAVICGSQVAPESVSSPFLCSPFSLKNRLI
INLTS*

BS26359.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-PC 2754 CG1308-PB 1..253 1..255 1205 92.5 Plus
CG43367-PD 2712 CG43367-PD 1..241 1..235 1203 95.9 Plus