Clone BS26389 Report

Search the DGRC for BS26389

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:263
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG42554-RA
Protein status:BS26389.pep: full length peptide match
Sequenced Size:674

Clone Sequence Records

BS26389.complete Sequence

674 bp assembled on 2011-08-24

GenBank Submission: KX804513

> BS26389.complete
GAAGTTATCAGTCGACATGGACTGCGCACCACTGAACTTGGCTCATTTCC
ACGAGCGAAGGTCGGAGCGATTTATACGCAATCACCGCTATGAGGAGGCC
ATTAAAGCGCTGGAAACATCCCTAATCTACATGCAGGATGCCCAAAAACG
GGTGGCTCTGCCCAAATCCAAGGAAGTTCTGGACACATTGACCCTCGATT
TTCAGCGCAAACTGCGTCAAATTGAGATGCGAAAGACGCAGCATGGTCTG
AACAAGCTGAAGGATTATGCTCCCTTGAAGGAAACCAGTCCCATGCTGCC
CCTGCGACCAGAAGCCGGAGCAAGTGGAGGCGCAGGAGGATCCGCTCAGT
CGGTGGCCAAGGCAATCGACAAAACAGTGCAGGACTTCGATGCCAAGTTC
ACCTCCTCCTTGGTGGCAAAGGCCTCTAGCACACTGGCCCATTCGGAGCC
CCATATGGAGACGCTGAAGAAGAGCGATTCTGCCCAGGAGGAGCAGGAAC
ACGATACTTGCGATCAGCGGCTGGCGGGCAGTGGAGACCTGGACCTGCCA
TCCTTGGCGCCCTTGGAGTTGCCCTCCTTCGATTACAGCCTGTTCACCAG
CTCCTCGGCTCCTTCGTTGGCCAGCTATGCCGGCATGGCTGAGAGCTTCC
AGAAATAGAAGCTTTCTAGACCAT

BS26389.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42554-RA 642 CG42554-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42554-RA 1023 CG42554-RA 163..806 15..658 3220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 835935..836553 40..658 3095 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:49:01 has no hits.

BS26389.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:30 Download gff for BS26389.complete
Subject Subject Range Query Range Percent Splice Strand
CG42554-RA 41..676 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:35 Download gff for BS26389.complete
Subject Subject Range Query Range Percent Splice Strand
CG42554-RA 165..800 17..652 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:01 Download gff for BS26389.complete
Subject Subject Range Query Range Percent Splice Strand
CG42554-RA 165..800 17..652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:01 Download gff for BS26389.complete
Subject Subject Range Query Range Percent Splice Strand
3L 835847..835870 17..40 100 -> Plus
3L 835936..836547 41..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:35 Download gff for BS26389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 835847..835870 17..40 100 -> Plus
arm_3L 835936..836547 41..652 100   Plus

BS26389.pep Sequence

Translation from 16 to 657

> BS26389.pep
MDCAPLNLAHFHERRSERFIRNHRYEEAIKALETSLIYMQDAQKRVALPK
SKEVLDTLTLDFQRKLRQIEMRKTQHGLNKLKDYAPLKETSPMLPLRPEA
GASGGAGGSAQSVAKAIDKTVQDFDAKFTSSLVAKASSTLAHSEPHMETL
KKSDSAQEEQEHDTCDQRLAGSGDLDLPSLAPLELPSFDYSLFTSSSAPS
LASYAGMAESFQK*

BS26389.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42554-PA 213 CG42554-PA 1..213 1..213 1077 100 Plus