BS26407.complete Sequence
455 bp assembled on 2011-09-14
GenBank Submission: KX802162
> BS26407.complete
GAAGTTATCAGTCGACATGAAAATGTTCAAGTCATTGCGTCTGCTTCCTC
ATATTGTTTCTCCGTTTCAAAAATGTTACTCAACCGATTTGATAAGTTTG
GTAGGCGTTCCCCGGGTCAAGATAACCAAGGGTCAGAATCGTTATTTGTT
GGTGAATATTCATACGCATGGCTTCACGAAGTATGGAAGAGTTATTGTCC
GTGGCGCCGATGTTGACAATCACTTGGCGGTCTTCGACTCGATTTTGGAG
GAGCTGGAACCCGAGGGCATATGTGCCAAAATCCTCGGTGGTGGAAGGAT
TCTCAACGAGGCAGAAAATAAAAAAATTAAGATCTATGGCACCTCCAGGA
CTTTCGGCGGTGCTGATCACACAAGGACAAGGAATATACTTCAAGCGTGG
ACCACTTATAAGGACTTTAAGATAACCGTTAAACAATAAAAGCTTTCTAG
ACCAT
BS26407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| janB-RA | 423 | CG7931-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| janB-RA | 569 | CG7931-RA | 91..514 | 17..440 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30038373..30038528 | 224..69 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 30038191..30038315 | 349..225 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 30038039..30038130 | 440..349 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 30038587..30038638 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:28:35 has no hits.
BS26407.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:36 Download gff for
BS26407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| janB-RA | 101..514 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:01 Download gff for
BS26407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| janB-RA | 91..504 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:26 Download gff for
BS26407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| janB-RA | 91..504 | 17..430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:26 Download gff for
BS26407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30038049..30038129 | 350..430 | 100 | <- | Minus |
| 3R | 30038191..30038315 | 225..349 | 100 | <- | Minus |
| 3R | 30038373..30038528 | 69..224 | 100 | <- | Minus |
| 3R | 30038587..30038638 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:01 Download gff for
BS26407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25863771..25863851 | 350..430 | 100 | <- | Minus |
| arm_3R | 25863913..25864037 | 225..349 | 100 | <- | Minus |
| arm_3R | 25864095..25864250 | 69..224 | 100 | <- | Minus |
| arm_3R | 25864309..25864360 | 17..68 | 100 | | Minus |
BS26407.pep Sequence
Translation from 16 to 438
> BS26407.pep
MKMFKSLRLLPHIVSPFQKCYSTDLISLVGVPRVKITKGQNRYLLVNIHT
HGFTKYGRVIVRGADVDNHLAVFDSILEELEPEGICAKILGGGRILNEAE
NKKIKIYGTSRTFGGADHTRTRNILQAWTTYKDFKITVKQ*
BS26407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| janB-PA | 140 | CG7931-PA | 1..140 | 1..140 | 729 | 100 | Plus |
| ocn-PA | 148 | CG7929-PA | 1..137 | 1..136 | 306 | 43.1 | Plus |
| CG18662-PA | 146 | CG18662-PA | 29..137 | 27..136 | 198 | 36.9 | Plus |
| janA-PA | 119 | CG7933-PA | 5..114 | 27..138 | 163 | 36.8 | Plus |
| janA-PC | 119 | CG7933-PC | 5..114 | 27..138 | 163 | 36.8 | Plus |
