BS26415.complete Sequence
2456 bp assembled on 2011-09-19
GenBank Submission: KX804815
> BS26415.complete
GAAGTTATCAGTCGACATGTTCCCGTCGTCGATTTTGGGGCGCAGCTATT
TGCTTTTTATGCTGGTGCTCGCCGTGGGCGTGTTCGCCCAACACGAGTGG
CAGGCCCGGGATGCCTTTGATGAGATAAAGAGGCAGTTCGACAAGGTGAA
CGCGGATAACTGCCCCATCCAACACCATTCGGACCTTTTCATGCCCATGG
ACGCGGTGTCCCACAAGCCGGACATCAAGGAGATCAACGTGAATCCGGTG
TTCCCCAACCGAACTGCCCTGCTGCATCTGCAGAATATGGCCCTTAGCAG
AAGCTTCTTCTGGAGCTACATCCTCCAGTCGAGGTTTATTCGACCCGCCA
TCAACGACACCTACGATCCCGGCATGATGTACTACTTTCTGTCCACCGTA
GCCGATGTATCCGCCAACCCACATATCAACGCCTCGGCCGTGTACTTCTC
CCCCAACAGCTCGTATTCGTCGTCGTATCGCGGCTTCTTCAATAAGACGT
TCCCCAGATTCGGGCCAAGAACCTTCAGGCTGGACGACTTCAACGATCCC
ATTCATCTGCAGAAGATATCGACGTGGAATACTTTCGATGTTCAGGATCT
GGGCGCCCATCACCCGGACTCCATATCCAAGGACTACACCCACGACCTGT
ATAAAATAAACGAGTGGTACCGCGCCTGGCTACCAGACAACGTCGAGGGA
CGGCACGATACGAAGATCACCTACCAGGTGGAAATCCGCTATGCGAACAA
CACAAACGAGACGTATACCTTCCACGGACCGCCTGGCTCTGAAGAAAACC
CTGGTCCGATTAAATTTACAAGGCCGTACTTCGATTGTGGCAGGTCCAAC
AAGTGGCTGGTGGCCGCAGTAGTGCCAATTGCGGATATCTACCCCCGACA
CACGCAGTTCCGTCACATTGAGTATCCCAAATACACGGCCGTTTCGGTTC
TTGAGATGGACTTCGAGCGTATCGACATAAACCAGTGTCCATTGGGTGAA
GGCAACAAAGGACCTAATCACTTTGCGGATACGGCGCGGTGTAAAAAAGA
AACGACAGAGTGTGAACCATTACAAGGCTGGGGCTTTAGGCGCGGTGGCT
ACCAGTGCCGTTGTAAGCCAGGTTTTCGGCTGCCCAACGTAGTGCGGCGA
CCTTATCTGGGCGAGATTGTGGAGCGCGCATCGGCAGAACAGTACTACAA
CGAGTACGACTGCCTTAAGATTGGCTGGATCCAAAAGCTTCCCATTCAGT
GGGATAAGGCCTCCTACCACATTCGCCAAAAGTATCTGGACCGGCATCCG
GAATATCGCAACTACACCACCGGCTCGCGATCACTTCATGCTGAGCACTT
AAATATTGATCAGGCGTTGAAGTATATTCATGGAGTCAACTATCGCACTT
GCAAAAACTTCCATCCGCAGGATCTGATTCTTCGCGGTGATGTGAGCTTC
GGCGCCAAGGAGCAGTTCGAGAACGAAGCCAAGATGGCCGTGAGACTGGC
CAACTTTATTAGCGCCTTTCTGCAGGTATCGGATCCCAACGAAGTGTACT
CGGGCAAGCGTGTGGCCGACAAGCCGCTGACCGAGGATCAAATGATCGGC
GAGACCCTTGCCATTGTCCTGGGCGACAGCAAGGTTTGGTCGGCCACAAT
GCTCTGGGAGCGCAACAAGTTTACCAATCGCACATATTTCGCACCCTATG
CCTACAAAACTGAGCTCAACACAAGAAAGTTCAAGGTGGAGGACCTGGCG
CGGCTCAACAAGACGCACGAACTCTACACGGAAAAGAAGTACTTCAAGTT
CCTGAAGCAGCGCTGGAACACCAACTTCGACGACCTGGAGACCTTCTACA
TGAAGATCAAGATCCGCCACAATGAAACAGGTGAATACCAGCAGAAGTAC
GAGCACTACCCAAATTCGTACAGAGCGGCCAACATCAAGCACGGCTACTG
GACTCAACCACAATTCGACTGCGATGGATATGTGAAGAAGTGGCTGGTGA
CCTATGCGGTGCCCTTCTTCGGCTGGGACAGCCTGAAAGTCAAGCTGGAA
TTCAAGGGTGTGGTAGCTGTCTCCATGGACATGCTGCAGCTGGACATCAA
CCAGTGCCCGGACTGGTACTACGAACCGAACGCCTTTAAGAACACACACA
AGTGTGACGAGCAATCGTCCTACTGCGTTCCCATTATGGGTCGTGGCTAT
GAAACCGGAGGCTACAAGTGCGAGTGCCTGCAGGGATACGAGTATCCTTT
CGAGGATCTGATTACCTACTACGATGGACAGCTCGTCGAGGCCGAGTACC
AAAATATTGTGGCTGATGTCGAGACCCGCTACGATATGTTCAAGTGCCGA
CTGGCCGGAGCTTCGGGTCTGCAATCCGCTTTGGGACTTGTGGTCGCTCT
GATCGGGCTCACGCTCACCCTGCTGTATAGATTTAGTTAAAAGCTTTCTA
GACCAT
BS26415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31195-RB | 2424 | CG31195-PB | 1..2424 | 17..2440 | 12120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31195-RB | 4001 | CG31195-RB | 223..2646 | 17..2440 | 12120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20761234..20762147 | 930..17 | 4570 | 100 | Minus |
| 3R | 32079331 | 3R | 20759374..20759907 | 2056..1523 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 20760879..20761175 | 1227..931 | 1485 | 100 | Minus |
| 3R | 32079331 | 3R | 20758624..20758890 | 2440..2174 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 20760639..20760819 | 1407..1227 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 20760445..20760565 | 1528..1408 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 20758982..20759099 | 2173..2056 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:02 has no hits.
BS26415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:40 Download gff for
BS26415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 224..2640 | 22..2438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:47 Download gff for
BS26415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 228..2644 | 22..2438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:21 Download gff for
BS26415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 228..2644 | 22..2438 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:21 Download gff for
BS26415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20758626..20758890 | 2174..2438 | 100 | <- | Minus |
| 3R | 20758982..20759099 | 2056..2173 | 100 | <- | Minus |
| 3R | 20759375..20759904 | 1526..2055 | 100 | <- | Minus |
| 3R | 20760448..20760565 | 1408..1525 | 100 | <- | Minus |
| 3R | 20760639..20760819 | 1227..1407 | 100 | <- | Minus |
| 3R | 20760880..20761175 | 931..1226 | 100 | <- | Minus |
| 3R | 20761234..20762142 | 22..930 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:47 Download gff for
BS26415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16584348..16584612 | 2174..2438 | 100 | <- | Minus |
| arm_3R | 16584704..16584821 | 2056..2173 | 100 | <- | Minus |
| arm_3R | 16585097..16585626 | 1526..2055 | 100 | <- | Minus |
| arm_3R | 16586170..16586287 | 1408..1525 | 100 | <- | Minus |
| arm_3R | 16586361..16586541 | 1227..1407 | 100 | <- | Minus |
| arm_3R | 16586602..16586897 | 931..1226 | 100 | <- | Minus |
| arm_3R | 16586956..16587864 | 22..930 | 100 | | Minus |
BS26415.pep Sequence
Translation from 16 to 2439
> BS26415.pep
MFPSSILGRSYLLFMLVLAVGVFAQHEWQARDAFDEIKRQFDKVNADNCP
IQHHSDLFMPMDAVSHKPDIKEINVNPVFPNRTALLHLQNMALSRSFFWS
YILQSRFIRPAINDTYDPGMMYYFLSTVADVSANPHINASAVYFSPNSSY
SSSYRGFFNKTFPRFGPRTFRLDDFNDPIHLQKISTWNTFDVQDLGAHHP
DSISKDYTHDLYKINEWYRAWLPDNVEGRHDTKITYQVEIRYANNTNETY
TFHGPPGSEENPGPIKFTRPYFDCGRSNKWLVAAVVPIADIYPRHTQFRH
IEYPKYTAVSVLEMDFERIDINQCPLGEGNKGPNHFADTARCKKETTECE
PLQGWGFRRGGYQCRCKPGFRLPNVVRRPYLGEIVERASAEQYYNEYDCL
KIGWIQKLPIQWDKASYHIRQKYLDRHPEYRNYTTGSRSLHAEHLNIDQA
LKYIHGVNYRTCKNFHPQDLILRGDVSFGAKEQFENEAKMAVRLANFISA
FLQVSDPNEVYSGKRVADKPLTEDQMIGETLAIVLGDSKVWSATMLWERN
KFTNRTYFAPYAYKTELNTRKFKVEDLARLNKTHELYTEKKYFKFLKQRW
NTNFDDLETFYMKIKIRHNETGEYQQKYEHYPNSYRAANIKHGYWTQPQF
DCDGYVKKWLVTYAVPFFGWDSLKVKLEFKGVVAVSMDMLQLDINQCPDW
YYEPNAFKNTHKCDEQSSYCVPIMGRGYETGGYKCECLQGYEYPFEDLIT
YYDGQLVEAEYQNIVADVETRYDMFKCRLAGASGLQSALGLVVALIGLTL
TLLYRFS*
BS26415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31195-PB | 807 | CG31195-PB | 1..807 | 1..807 | 4417 | 100 | Plus |
| CG43795-PA | 1420 | CG43795-PA | 433..719 | 474..773 | 271 | 25.8 | Plus |
| CG43795-PA | 1420 | CG43795-PA | 587..727 | 266..400 | 225 | 34.9 | Plus |
