BS26481.complete Sequence
1073 bp assembled on 2011-08-24
GenBank Submission: KX801228
> BS26481.complete
GAAGTTATCAGTCGCCATGGAAAATACGCCTCTCAAGTTTCCACACGAAA
TTCGCGATGTGGAGGAGTCCACCAATGCTGAGCTATTGGATCACTTCCAT
GGTGAGCGAACTGGCTTCGTTCAGGTCGGATCGGAGGGTTACTTCTTTCC
GCACAAGTACAAGGACGAGGCCGAGCGGTACTACAACTTTGAGGCACGGC
CGGATGACGTGTGGATAGCCACGGTGCCCAGATCGGGCACCACTTGGACG
CAGGAGCTCATTTGGCTGGTGGCCAATGGGCTGGATTTTGAGCATGCCCA
GGAGCGACCACTAACCGAACGCTTTCCATTCTTTGAATTTCCGCTCTTTG
TGCATCCCAAAATTAAGGAAGAGCTGCAGGAGGAAAACCGAGACTCGGCT
GAAGCTCTGGAGTTCATTGAGAAGATAGCTCGACCGGGTTACGAGGCTTT
GAGCGAAATACCACGCTCGCAGCGACGGTTTATCAAAACGCATTTCCCCT
TTTCTCTAATGCCGCCTAGTGTTCTCGAAAAGAAGTGCAAGGTGATCTAT
GTGGTTCGTGATCCCAAGGATGTTGCAGTTTCCTACTACCATTTGAACAG
ACTCTTCCGCACCCAAGGATACGTCGGAGATTTTGAGCGTTACTGGCATT
ATTTCCAAAACGGATTAAATCCCTGGCTGCCCTATTACAGTCACGTTAAG
GAGGCGCGGGAGCATGCCCATTTGTCCAATGTACTCTTTCTGCGCTACGA
AGACATGTTGGCTGATCTGCCAGGTGCAATCAACAGCATAGCCAGCTTCT
TAGAGTGTCCACCGAAACCCGAGGATATGGATAGGCTACTCGATCATCTG
AGCATCAGAAGCTTCCGTGAGAACAAGTCCGTAAACATGCACGAAATGGC
TTCCGTTGGCGTTCTCAACAAAGGAGAGGCAGGATTCGTGCGCAGCGGAG
CCAAGACAGCGTATCAGCCGCAACAGGAGTTCGTGGAGAATCCGAAGCTT
TTGAAGAGCGCCAACGAGTGGGTGGAACAGAATATTAAATCATTCAAGAC
CATATGAAAGCTTTCTAGACCAT
BS26481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St4-RB | 1041 | CG6704-PB | 1..1041 | 17..1057 | 5205 | 100 | Plus |
| St4-RA | 1041 | CG6704-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St4-RB | 1183 | CG6704-RB | 137..1179 | 17..1059 | 5215 | 100 | Plus |
| St4-RA | 1081 | CG6704-RA | 35..1077 | 17..1059 | 5215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13969914..13970304 | 1059..669 | 1955 | 100 | Minus |
| 2R | 25286936 | 2R | 13970354..13970685 | 668..337 | 1660 | 100 | Minus |
| 2R | 25286936 | 2R | 13970741..13970976 | 336..101 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 13971041..13971127 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:51:57 has no hits.
BS26481.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:40:38 Download gff for
BS26481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6704-RA | 31..1070 | 17..1056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:14 Download gff for
BS26481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St4-RA | 35..1074 | 17..1056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:29 Download gff for
BS26481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St4-RA | 35..1074 | 17..1056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:29 Download gff for
BS26481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13970741..13970975 | 102..336 | 100 | <- | Minus |
| 2R | 13971043..13971127 | 17..101 | 100 | | Minus |
| 2R | 13969917..13970304 | 669..1056 | 100 | <- | Minus |
| 2R | 13970354..13970685 | 337..668 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:14 Download gff for
BS26481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9857422..9857809 | 669..1056 | 100 | <- | Minus |
| arm_2R | 9857859..9858190 | 337..668 | 100 | <- | Minus |
| arm_2R | 9858246..9858480 | 102..336 | 100 | <- | Minus |
| arm_2R | 9858548..9858632 | 17..101 | 100 | | Minus |
BS26481.pep Sequence
Translation from 16 to 1056
> BS26481.pep
MENTPLKFPHEIRDVEESTNAELLDHFHGERTGFVQVGSEGYFFPHKYKD
EAERYYNFEARPDDVWIATVPRSGTTWTQELIWLVANGLDFEHAQERPLT
ERFPFFEFPLFVHPKIKEELQEENRDSAEALEFIEKIARPGYEALSEIPR
SQRRFIKTHFPFSLMPPSVLEKKCKVIYVVRDPKDVAVSYYHLNRLFRTQ
GYVGDFERYWHYFQNGLNPWLPYYSHVKEAREHAHLSNVLFLRYEDMLAD
LPGAINSIASFLECPPKPEDMDRLLDHLSIRSFRENKSVNMHEMASVGVL
NKGEAGFVRSGAKTAYQPQQEFVENPKLLKSANEWVEQNIKSFKTI*
BS26481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St4-PB | 346 | CG6704-PB | 1..346 | 1..346 | 1857 | 100 | Plus |
| St4-PA | 346 | CG6704-PA | 1..346 | 1..346 | 1857 | 100 | Plus |
| St1-PB | 338 | CG5428-PB | 58..323 | 53..344 | 386 | 32.8 | Plus |
| St2-PB | 316 | CG16733-PB | 26..307 | 34..341 | 374 | 29 | Plus |
| St2-PA | 316 | CG16733-PA | 26..307 | 34..341 | 374 | 29 | Plus |
