BS26504.complete Sequence
1430 bp assembled on 2011-09-19
GenBank Submission: KX804313
> BS26504.complete
GAAGTTATCAGTCGACATGCGGTGCAGGATCTTGGTGCTGTGTGCATTCA
TATGCCTCCTTGTAATTTTGACCGAGGCCAGGCAGAGGAAAGTTAACCAT
TCCGCTGATAGAAGATCATTGGCAGTCAGAAGTGGACACAGGAATGAGCG
GAGTAGTGCTCTTCATGGAAGAGGATTGGCTGCACGATCAAGGAATCAAA
GGAAACGCAGATTAAATGCTGCCAAGAGAAGCAGGAGGAAGCGTAACTTG
GCTAGAAAGTCAAATCGGAAAATTAGGGCCAAGACCGAGTCAATCGTTAG
AAGTGATTCTAGTTACGCTACTTTACCATTGGACTTCCAACAGAACTTCG
TGCGAACCACCGACAACCTGCGATCGGAGAAGGCCTTTTTGGCCAATCGA
TATGGCTTTAGTTTTGCCAAAAGTTCTGGAACGGCTACTTTGAAAAACAC
GGCGAACATGGAGTATACCTGCAAAATGAACATTGGTACACCCAAGCAGA
AGTTCACAGTTCTTCCGGACACCGGAAGTTCGAATATTTGGGTGCCAGGA
CCGCATTGCAAGAGTAAGGCCTGCAAGAAACACAAACAATATCATCCGGC
CAAGTCAAGTACCTATGTTAAGAATGGGAAATCCTTTGCCATCACCTACG
GTTCGGGTAGTGTGGCAGGAGTTCTGGCCAAGGATACGGTGAGAATAGCT
GGGCTGGTTGTGACCAATCAAACTTTCGCCATGACCACCAAGGAACCGGG
AACCACTTTCGTGACCTCAAATTTCGATGGTATACTAGGGCTGGGATATC
GATCCATAGCGGTGGACAATGTGAAGACCCTGGTGCAGAATATGTGCTCG
GAGGATGTGATCACCAGTTGCAAGTTTGCCATTTGCATGAAGGGCGGCGG
CAGTTCCTCTCGAGGTGGTGCAATAATCTTCGGCAGCTCCAATACAAGTG
CTTATAGCGGATCCAATAGCTACACATACACTCCGGTGACCAAAAAGGGT
TACTGGCAGTTCACTCTGCAGGACATTTACGTGGGCGGCACCAAAGTGAG
CGGCTCGGTGCAGGCCATTGTGGATTCCGGAACTTCATTGATCACAGCTC
CGACGGCCATCTACAACAAGATCAACAAGGTCATCGGATGCAGGGCTACC
TCCAGCGGAGAGTGTTGGATGAAGTGCGCCAAGAAAATACCCGACTTCAC
CTTTGTCATCGCGGGCAAGAAGTTCGTCGTCAAGGGTAACAAAATGAAAT
TAAAGGTGAGGACCAACAGAGGCAGGACAGTCTGCATATCGGCGGTAACT
GAAGTTCCCGACGAGCCAGTGATCCTGGGCGATGCCTTCATCCGGCATTT
CTGCACGGAATTCGACTTGGCCAACAATCGCATTGGATTCGCTGCCACTA
CGTATTCCACTTAGAAGCTTTCTAGACCAT
BS26504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17283-RA | 1398 | CG17283-PA | 1..1398 | 17..1414 | 6990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17283-RA | 1585 | CG17283-RA | 6..1405 | 16..1415 | 7000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17407881..17409280 | 16..1415 | 7000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:55:18 has no hits.
BS26504.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:43:01 Download gff for
BS26504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17283-RA | 1..1398 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:10 Download gff for
BS26504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17283-RA | 7..1404 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:42 Download gff for
BS26504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17283-RA | 7..1404 | 17..1414 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:42 Download gff for
BS26504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17407882..17409279 | 17..1414 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:10 Download gff for
BS26504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13233604..13235001 | 17..1414 | 100 | | Plus |
BS26504.pep Sequence
Translation from 16 to 1413
> BS26504.pep
MRCRILVLCAFICLLVILTEARQRKVNHSADRRSLAVRSGHRNERSSALH
GRGLAARSRNQRKRRLNAAKRSRRKRNLARKSNRKIRAKTESIVRSDSSY
ATLPLDFQQNFVRTTDNLRSEKAFLANRYGFSFAKSSGTATLKNTANMEY
TCKMNIGTPKQKFTVLPDTGSSNIWVPGPHCKSKACKKHKQYHPAKSSTY
VKNGKSFAITYGSGSVAGVLAKDTVRIAGLVVTNQTFAMTTKEPGTTFVT
SNFDGILGLGYRSIAVDNVKTLVQNMCSEDVITSCKFAICMKGGGSSSRG
GAIIFGSSNTSAYSGSNSYTYTPVTKKGYWQFTLQDIYVGGTKVSGSVQA
IVDSGTSLITAPTAIYNKINKVIGCRATSSGECWMKCAKKIPDFTFVIAG
KKFVVKGNKMKLKVRTNRGRTVCISAVTEVPDEPVILGDAFIRHFCTEFD
LANNRIGFAATTYST*
BS26504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17283-PA | 465 | CG17283-PA | 1..465 | 1..465 | 2400 | 100 | Plus |
| Bace-PB | 372 | CG13095-PB | 22..369 | 103..459 | 741 | 43.4 | Plus |
| Bace-PA | 372 | CG13095-PA | 22..369 | 103..459 | 741 | 43.4 | Plus |
| CG5863-PA | 395 | CG5863-PA | 28..392 | 103..459 | 734 | 41.1 | Plus |
| CG17134-PA | 391 | CG17134-PA | 25..386 | 105..459 | 693 | 42.9 | Plus |
