BS26526.complete Sequence
776 bp assembled on 2011-08-26
GenBank Submission: KX803320
> BS26526.complete
GAAGTTATCAGTCGACATGCGTGCCGCGCCTCCTGAGCCTGAGCCTCTGC
AATTAGCCGGATCCGGTGAACAGTTCCTCGTCCTGGGCGACTCCGGCGTG
GGAAAGACCTGTCTCCTCTACCAGTACACGGATGGCCGGTTCCACACCCA
GTTCATCTCCACTGTGGGCATCGACTTCCGCGAAAAGCGGCTGCTGTACA
ACTCCCGCGGACGCCGCCACCGCATCCACCTGCAGATCTGGGACACCGCC
GGACAGGAGCGCTTCCGTTCACTAACCACGGCGTTTTACCGCGACGCCAT
GGGTTTCCTGCTCATCTTCGACCTGACCAGCGAGAAGAGCTTCCTGGAGA
CGGCCAACTGGCTGTCGCAGCTGCGGACGCACGCCTACTCCGAGGACCCC
GACGTGGTCCTCTGCGGCAACAAGTGCGACCTGCTGCAGCTGCGCGTGGT
GAGTCGCGACCAGGTGGCGGCCCTCTGCCGACGCTACCGGCTGCCGTACA
TCGAGACGAGCGCCTGCACCGGCGCCAACGTCAAGGAGGCCGTGGAGCTG
CTGGTTGGCCGGGTCATGGAGCGGATCGAGAACGCGGCCTGCAACCGCGA
GTTCTCCCTGCTACTGACCCAGTCGCGATGCCTGCCGAACATCGCCTACG
GTCAGCCGGAGGACCTGGTGCGCCTCCACGATCGGCGAGAGGAGCCCTGC
TCGCGGCGCAACTGCCGCAACTGTTAGAAGCTTTCTAGACCTATTCGTTG
GGCGCCGCGAGGGCGGGGGGAGGGGG
BS26526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-RB | 711 | CG14791-PB | 1..711 | 17..727 | 3555 | 100 | Plus |
| Rab27-RC | 693 | CG14791-PC | 38..693 | 72..727 | 3280 | 100 | Plus |
| RabX4-RA | 642 | CG31118-PA | 175..274 | 230..329 | 185 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-RB | 1466 | CG14791-RB | 663..1373 | 17..727 | 3555 | 100 | Plus |
| Rab27-RC | 1564 | CG14791-RC | 816..1471 | 72..727 | 3280 | 100 | Plus |
| Rab27-RC | 1564 | CG14791-RC | 663..719 | 17..73 | 285 | 100 | Plus |
| RabX4-RA | 1416 | CG31118-RA | 625..724 | 230..329 | 185 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1473977..1474511 | 727..193 | 2675 | 100 | Minus |
| X | 23542271 | X | 1474675..1474796 | 193..72 | 610 | 100 | Minus |
| X | 23542271 | X | 1476256..1476312 | 73..17 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 24827475..24827574 | 329..230 | 185 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:20:23 has no hits.
BS26526.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:26 Download gff for
BS26526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 619..1333 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:46 Download gff for
BS26526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 619..1333 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:04 Download gff for
BS26526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 663..1377 | 17..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:04 Download gff for
BS26526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1476256..1476312 | 17..73 | 100 | | Minus |
| X | 1473973..1474510 | 194..731 | 99 | <- | Minus |
| X | 1474675..1474794 | 74..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:46 Download gff for
BS26526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1370289..1370345 | 17..73 | 100 | | Minus |
| arm_X | 1368006..1368543 | 194..731 | 99 | <- | Minus |
| arm_X | 1368708..1368827 | 74..193 | 100 | <- | Minus |
BS26526.pep Sequence
Translation from 16 to 726
> BS26526.pep
MRAAPPEPEPLQLAGSGEQFLVLGDSGVGKTCLLYQYTDGRFHTQFISTV
GIDFREKRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLI
FDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQV
AALCRRYRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLL
TQSRCLPNIAYGQPEDLVRLHDRREEPCSRRNCRNC*
BS26526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-PB | 236 | CG14791-PB | 1..236 | 1..236 | 1245 | 100 | Plus |
| Rab27-PC | 230 | CG14791-PC | 13..230 | 19..236 | 1147 | 99.5 | Plus |
| Rab8-PC | 207 | CG8287-PC | 10..174 | 19..188 | 389 | 44.7 | Plus |
| Rab8-PA | 207 | CG8287-PA | 10..174 | 19..188 | 389 | 44.7 | Plus |
| Rab10-PA | 204 | CG17060-PA | 11..173 | 19..186 | 387 | 44 | Plus |
