BS26527.complete Sequence
659 bp assembled on 2011-08-26
GenBank Submission: KX804875
> BS26527.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGACACACTCAAATCTCT
GATCAAGCAACACTATGACAGGATTAATAAATTGGAGGACCAGAAATATG
ATCTTGAGTATGTTGTTAAACGCAAGGATGTTGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTAAAAGCTTT
CTAGACCAT
BS26527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RA | 627 | CG7178-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
| wupA-RJ | 600 | CG7178-PJ | 1..557 | 17..573 | 2785 | 100 | Plus |
| wupA-RM | 555 | CG7178-PM | 1..555 | 89..643 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RA | 1160 | CG7178-RA | 141..767 | 17..643 | 3135 | 100 | Plus |
| wupA-RK | 1159 | CG7178-RK | 141..766 | 17..643 | 3070 | 99.7 | Plus |
| wupA-RL | 1345 | CG7178-RL | 345..952 | 36..643 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18106681..18106822 | 571..430 | 710 | 100 | Minus |
| X | 23542271 | X | 18113447..18113577 | 160..30 | 655 | 100 | Minus |
| X | 23542271 | X | 18113258..18113382 | 284..160 | 625 | 100 | Minus |
| X | 23542271 | X | 18112562..18112664 | 385..283 | 515 | 100 | Minus |
| X | 23542271 | X | 18105961..18106034 | 643..570 | 370 | 100 | Minus |
| X | 23542271 | X | 18106888..18106933 | 429..384 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:09 has no hits.
BS26527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:27 Download gff for
BS26527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RA | 138..762 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:08 Download gff for
BS26527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RA | 141..765 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:25 Download gff for
BS26527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RA | 141..765 | 17..641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:25 Download gff for
BS26527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18106681..18106822 | 430..571 | 100 | <- | Minus |
| X | 18106888..18106931 | 386..429 | 100 | <- | Minus |
| X | 18112562..18112662 | 285..385 | 100 | <- | Minus |
| X | 18113258..18113381 | 161..284 | 100 | <- | Minus |
| X | 18113447..18113575 | 32..160 | 100 | <- | Minus |
| X | 18105963..18106032 | 572..641 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:08 Download gff for
BS26527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18000714..18000855 | 430..571 | 100 | <- | Minus |
| arm_X | 18000921..18000964 | 386..429 | 100 | <- | Minus |
| arm_X | 18006595..18006695 | 285..385 | 100 | <- | Minus |
| arm_X | 18007291..18007414 | 161..284 | 100 | <- | Minus |
| arm_X | 18007480..18007608 | 32..160 | 100 | <- | Minus |
| arm_X | 17999996..18000065 | 572..641 | 100 | <- | Minus |
BS26527.pep Sequence
Translation from 16 to 642
> BS26527.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEDTLKSLIKQHY
DRINKLEDQKYDLEYVVKRKDVEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*
BS26527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-PA | 208 | CG7178-PA | 1..208 | 1..208 | 1041 | 100 | Plus |
| wupA-PB | 208 | CG7178-PB | 1..208 | 1..208 | 962 | 92.3 | Plus |
| wupA-PF | 208 | CG7178-PF | 1..208 | 1..208 | 941 | 90.4 | Plus |
| wupA-PC | 208 | CG7178-PC | 1..208 | 1..208 | 941 | 90.4 | Plus |
| wupA-PE | 208 | CG7178-PE | 1..208 | 1..208 | 933 | 90.4 | Plus |
