BS26530.complete Sequence
998 bp assembled on 2011-08-26
GenBank Submission: KX802528
> BS26530.complete
GAAGTTATCAGTCGACATGTGTAACGCCAATTGCTGTTCGAATCCCAAAG
GCAAGGCTGGCACCAAAACCGCCATCAATAATACAAATTGGCCAGATATC
ATACCAACTCCAGAAAGTCTGCTGTATCCCTATGAGGTCATCGAGGAGAT
CGCCGACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCA
TCTGCGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAG
ATCTTCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGG
CCATGCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGG
CGATGCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGC
TCAATGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGC
CACCAATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCA
TGCTGATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCG
CTCCAGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGT
GAACTCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGG
CCATGGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGT
GGTCCCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGG
CGTGGATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGC
ACTGCGACATGAAGGTATTCGCCTTCAGCCTCATCACAAATAAGTGCGCC
ACCGAGTACAGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTAT
GGCTGTGGCCAAGAACAGGCAAAAGGCCTGCTGCGAACTGGTCTCCCGAC
TCATCCGGGAAATCCACTTGGCATCCGCTTAAAAGCTTTCTAGACCAT
BS26530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RE | 966 | CG16758-PE | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG16758-RG | 1119 | CG16758-PG | 235..1119 | 98..982 | 4365 | 99.5 | Plus |
| CG16758-RF | 987 | CG16758-PF | 103..987 | 98..982 | 4365 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RE | 1449 | CG16758-RE | 319..1284 | 17..982 | 4830 | 100 | Plus |
| CG16758-RG | 1617 | CG16758-RG | 568..1452 | 98..982 | 4365 | 99.5 | Plus |
| CG16758-RF | 1245 | CG16758-RF | 196..1080 | 98..982 | 4365 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2499689..2500462 | 897..124 | 3870 | 100 | Minus |
| 3L | 28110227 | 3L | 2502388..2502497 | 126..17 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 2499537..2499625 | 982..894 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:54 has no hits.
BS26530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-26 13:54:28 Download gff for
BS26530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1282 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:33 Download gff for
BS26530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1282 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:49 Download gff for
BS26530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1282 | 17..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:49 Download gff for
BS26530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2499539..2499623 | 896..980 | 100 | <- | Minus |
| 3L | 2499691..2500462 | 124..895 | 100 | <- | Minus |
| 3L | 2502391..2502497 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:33 Download gff for
BS26530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2499539..2499623 | 896..980 | 100 | <- | Minus |
| arm_3L | 2499691..2500462 | 124..895 | 100 | <- | Minus |
| arm_3L | 2502391..2502497 | 17..123 | 100 | | Minus |
BS26530.pep Sequence
Translation from 16 to 981
> BS26530.pep
MCNANCCSNPKGKAGTKTAINNTNWPDIIPTPESLLYPYEVIEEIADFIT
KGSGMRPKIGIICGSGLGSLADMIQDPKIFEYEKIPNFPVSTVEGHAGRL
VVGTLEGATVMAMQGRFHFYEGYPLAKCSMPVRVMKLCGVEYLFATNAAG
GINPRFAVGDIMLMHDHVNMLGFAGNSPLQGPNDPRFGPRFPALVNSYNK
DLINKAIEIAKAMGIESNIHVGVYSCLGGPNYETIAELKALRMMGVDAVG
MSTVHEVITARHCDMKVFAFSLITNKCATEYSDKKDDEANHDEVMAVAKN
RQKACCELVSRLIREIHLASA*
BS26530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-PE | 321 | CG16758-PE | 1..321 | 1..321 | 1699 | 100 | Plus |
| CG16758-PF | 328 | CG16758-PF | 1..328 | 1..321 | 1561 | 91.8 | Plus |
| CG16758-PG | 372 | CG16758-PG | 45..372 | 1..321 | 1561 | 91.8 | Plus |
| CG16758-PH | 396 | CG16758-PH | 45..396 | 1..321 | 1526 | 85.6 | Plus |
| CG16758-PD | 329 | CG16758-PD | 12..329 | 3..321 | 1507 | 92.2 | Plus |
